Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00023 ATGGTTTCGCTGAAACTGCAGAAGCGGCTTGCAGCCAGCGTGCTCAAGTGCGGAAGAGGAAAGGTGTGGCTTGACCCCAATGAAGTCAACGACATCTCCATGGCCAATTCTCGGCAAAACATCAGGAAGTTGGTTAAGGATGGGTTTATCATTAGGAAGCCAACCAAGATTCACTCCCGATCACGTGCTCGTAGGATGAAGGAGGCAAAGAGGAAGGGCCGTCATTCAGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACAAAGATACTCTGGATGAGAAGGATGCGTGTGCTCAGACGGTTGCTTCGCAAGTACAGGGAGTCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTCAAAGGTAATGTTTTCAAAAACAAGAGGGTTTTGATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCCAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCTAAGCGTGCAAAGAACAAGGCTAGCAGGGAACGGAAAATTGCACGGAGGGAGGAGCGCTTAGCCCAAGGTCCCGTTGATAAGGCATCTACAGCACCCAGTGCCCCAGCACCCCAACCTGCCCAGTGA 609 0.4975 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPVDKASTAPSAPAPQPAQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00023 202 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vium1841g00023 202 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vium1841g00023 202 MobiDBLite consensus disorder prediction 57 85 - -
Vium1841g00023 202 FunFam Ribosomal protein L19 57 192 - -
Vium1841g00023 202 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vium1841g00023 202 MobiDBLite consensus disorder prediction 149 202 - -
Vium1841g00023 202 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vium1841g00023 202 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vium1841g00023 202 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vium1841g00023 202 Gene3D - 57 190 - -
Vium1841g00023 202 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vium1841g00023 202 MobiDBLite consensus disorder prediction 149 184 - -
Vium1841g00023 202 FunFam Ribosomal protein L19 1 56 - -
Vium1841g00023 202 MobiDBLite consensus disorder prediction 57 79 - -
Vium1841g00023 202 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00023 Vium-Chr1841 132370 134276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00023 1 200 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 87.000 4.16e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00023 K02885 - gmx:100527275 358.221