Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1841g00009 ATGACCGCTGAAGCGCCGAAGCCAGCGCGACCCTGTGACTACTGTGGTCACTCCATGGCGGTTCTCTATTGCAGAGCCGATTCAGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCTACCATACTCTGTTCCACCGACACCTCTGTTTTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAAATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCCCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAGGTCTGAGCCATTGGATCTTGAACAATATGTGCAACCAGAAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGTGGCATAGAGAAATGAGCGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTGGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCTGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTATGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGATATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCTAAGATGGAGCGGGAACATTAA 1035 0.4937 MTAEAPKPARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVFCQNCDWEKHNPSLSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGFSDLFVWDAPSVVTLDDLISSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELARSEPLDLEQYVQPENLSSAFESDVEWHREMSEPMYQVVPPDPSLRTYTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDYALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEREH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1841g00009 344 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vium1841g00009 344 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vium1841g00009 344 Pfam CCT motif 298 340 IPR010402 GO:0005515
Vium1841g00009 344 CDD Bbox1_BBX-like 11 54 - -
Vium1841g00009 344 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Vium1841g00009 344 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vium1841g00009 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 340 - -
Vium1841g00009 344 MobiDBLite consensus disorder prediction 255 275 - -
Vium1841g00009 344 CDD Bbox1_BBX-like 54 97 - -
Vium1841g00009 344 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Vium1841g00009 344 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Vium1841g00009 344 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1841g00009 Vium-Chr1841 58935 63620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1841g00009 4 313 C2C2-CO-like Transcription Factor Family AT2G47890 40.184 3.77e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium1841g00009 CCT 7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1841g00009 - - gmx:100817838 578.941