Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium183g00004 ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCAGAAGAAGACCTTAAACTCATCAAGTACATTCAGACTCATGGACCAGGCAATTGGAGATCCCTACCTAAAAGTGCTGGTCTACAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCTGATATTAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATACGATTATTCAGTTGCACAGTATCATGGGAAACAAATGGTCATCTATAGCAGCTAGGTTGCCAGGAAGAACTGACAATGAAATAAAGAACTATTGGAACACACACATTAGGAAGAGGCTTCTTCGTATGGGAATTGATCCAGTTACACATGCCCCACGCCTTGACCTGCTAGACATGTCATCTATTTTAAGGACAGTGTTGAATCCCTCCCTTAACATGCAAGGCTTCTTAGGAGGAGCTCAAGTTTTGATCAACCAAGGCTTGTTAAACCTTGCTGCTACAGCCTCTCTTCTAGAGAATCAAAATTTGGCTTCACACAATTACGTACAAAGCCAAGTTGCTCAACCACTGGACATAACTCAGCTTCAAAGTTTGGAAGGATTCTCTGGCACCGTGGAAAACTTTAGCTGCTCAAATTCTCCTTCGGGTGATGAGAACCTTGTTTTGCAACAAAACCAAGTTGATTTGTTAGGTAACCATGTTTTTGCGCATTCCATGAAAAATGCAGAGCTGAAAAAGGGGTATGACTCGGCTATGCCTACGCCTGAGTCAAGTCCAAACCAGTTGAATTCATCATCCAACTATTTGAGAAGTGGCGGGGAGGAAGAGAAGAATAGTTTTTGCAGTGACTTGTTCGAATTTGATATTCCAGAGGGTTTAGACATTGCTGATATTTTTTGTACTGTCCCAGAGTGTTAA 927 0.4261 MGRAPCCDKNGLKKGPWTPEEDLKLIKYIQTHGPGNWRSLPKSAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDTIIQLHSIMGNKWSSIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRTVLNPSLNMQGFLGGAQVLINQGLLNLAATASLLENQNLASHNYVQSQVAQPLDITQLQSLEGFSGTVENFSCSNSPSGDENLVLQQNQVDLLGNHVFAHSMKNAELKKGYDSAMPTPESSPNQLNSSSNYLRSGGEEEKNSFCSDLFEFDIPEGLDIADIFCTVPEC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium183g00004 308 Gene3D - 13 66 - -
Vium183g00004 308 CDD SANT 69 112 IPR001005 -
Vium183g00004 308 SMART sant 13 63 IPR001005 -
Vium183g00004 308 SMART sant 66 114 IPR001005 -
Vium183g00004 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium183g00004 308 CDD SANT 16 61 IPR001005 -
Vium183g00004 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Vium183g00004 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium183g00004 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium183g00004 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium183g00004 308 MobiDBLite consensus disorder prediction 256 274 - -
Vium183g00004 308 FunFam MYB-related transcription factor 13 66 - -
Vium183g00004 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium183g00004 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium183g00004 308 MobiDBLite consensus disorder prediction 251 274 - -
Vium183g00004 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium183g00004 308 Gene3D - 69 116 - -
Vium183g00004 308 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium183g00004 Vium-Chr183 73770 75359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium183g00004 1 298 MYB Transcription Factor Family AT4G21440 47.262 7.94e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium183g00004 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium183g00004 K09422 - gmx:100817731 466.848