Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1836g00009 ATGTTTGTTCCAAAAGTGAACGAAAAGCTGCTTGAAGACCTTGAGGTAATGGGATTTCCAAAGGCACGGGCAACCAGAGCACTTCATTGTTCTGGTAATACCAGCTTAGAGGATGCTATAAATTGGATAGTTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGATGTTGAGGTAGAGTCATCTGAGTCCTTCCCCATCTCAGAAGAAATCAGAATCAAAGCACAAAGTTTAAGGGAACAAGAACGTAAGAGGATAGAGCAGGAAGAGAAAAGATTGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTTGAAGCAAAGCGAGTTGCTGAAGAAAATGAAAGACAACGGAATTTATCCCTGAGAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCTAGAGAGAAAGTTCTACAGAAACTAGAGCAGGATAAGTTAAATAGAAAATTTAAACAAGGATTGCCTTTAGAAGGCCAAGGAACCATCAAATCATCTGCTACTAAACTACAAAAGGAAAAGAAGTTAAATCCAGTTTATACAACTACAAAAACTGAGCAGTTAAGAGAATGTCTGAGGAATCTGAAGCGTAACCATCAGGGTGAGGATGCAAGAGTCAGAAGAGCCTTTCAAACACTACTAATCTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGAAAAGTACAGGAAAATACGACTGAATAATCCATTATTGCTGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTTAG 786 0.3906 MFVPKVNEKLLEDLEVMGFPKARATRALHCSGNTSLEDAINWIVDHENDIDIDEMPLVDVDVEVESSESFPISEEIRIKAQSLREQERKRIEQEEKRLEREREKERIQAGKRLLEAKRVAEENERQRNLSLRKAEKEEEKRAREKVLQKLEQDKLNRKFKQGLPLEGQGTIKSSATKLQKEKKLNPVYTTTKTEQLRECLRNLKRNHQGEDARVRRAFQTLLIYVGNVAKNPKEEKYRKIRLNNPLLLDRVGSLNGGVEFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1836g00009 261 Coils Coil 119 156 - -
Vium1836g00009 261 Coils Coil 77 108 - -
Vium1836g00009 261 PANTHER F13M7.16 PROTEIN 1 261 - -
Vium1836g00009 261 Pfam PUB domain 213 261 IPR018997 -
Vium1836g00009 261 CDD UBA_PUB_plant 6 53 - -
Vium1836g00009 261 Gene3D - 8 53 - -
Vium1836g00009 261 Pfam UBA/TS-N domain 7 43 IPR015940 -
Vium1836g00009 261 SUPERFAMILY UBA-like 5 57 IPR009060 GO:0005515
Vium1836g00009 261 Gene3D - 190 261 - -
Vium1836g00009 261 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Vium1836g00009 261 SUPERFAMILY PUG domain-like 187 261 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1836g00009 Vium-Chr1836 122920 136856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1836g00009 1 261 C2H2 Transcription Factor Family AT1G04850 60.837 1.20e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1836g00009 K24348 - vum:124828089 445.277