Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1830g00009 ATGATTCCGAAGACTCCGTCGGAGTATCTATCGTTCGCGTTAGGGTTTCTGCTTTGTGCCACAGTTCCTTTCGTTCACGCGGAGTCATCCACGTGCTTGACAGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCTCCAAAATGCCCCCGCTGGAAGCTCTCCGAATACGATTCACCTCCCAAAACCACGGCACGTTGCCAGATTGCGATGCTCCAAGGCCACAGAAAGTCTCAAGAGGATCGCGCTCTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCAGTGTGGACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTTGACGGTCATAACGGTGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGTTGCCTTTTCTGTTATTTCAAAGACATCAACAGGAGCATGGCTTCACAAGAGAGACCGTGACCATGCAAACTTACTGCATAGATGGAAGGAGATTCTAGGTTCAGAATGGCATGGACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTATTGAGGGCAGTCCATGACATTGATGCTAAATTTTCTGAGGAAGCGTCTAGAAATAATTTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATATTGTGCTCTAAAAATTTTCAGTCTCCCAAAGAGGCTAAAGATTTATTATTAAAGCTATATAGACAGAAAGAGCATGATGGTTCTGTTTCTATGTGGGATCGTGAAAAGTACAAAATGGCTTCATCCCATGGTCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTAGCAGATTTAATTGTTAATAATGCCTTAAAAAAGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTATCAAATCCTCTGTAAACTCGCGTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTCCTTCAAAAGCTCAGGTAATGGCATCTTGTCTAATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACGAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGGTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAAATAGAGGACTCCAAGCAGATTGCCAAAAAAGTTGACTGGGATGACTATTTGTATGAACTACCTCCACCTCCACCCGATTCCCTTTCTCAGCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAACCTGAAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATACTGATTCTAGTAATGGGTCTTCTGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGGTCATTTGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTTATCAAGATACTAATGTTGAAAAAGAGAACAGGGATGATACAAATACAACCAACAGCACAACGACTTCTGATTGTCAGAATGGTCCTTCTAATTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGTCTAAGGGAGAAGTACTTCGGAGAAGTTTTTTTAAATGCCTCTACATGCTTTGAAGATCCACTATCGACTGGAAAATCAAACTGTGTCTTGGAATCATCACATGAGAATTCATTTCCGAACAAATTTCGACCACAAAGAACCCTATATGAAGAAGGCTTGAATCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTGTCACTGTCTAAACTTCTATATTCCATGGAAGATGCATATGGTACTGCTGAGCAAGAAAGACTTGAGCAAGCTAAACACGCTCAGATACTACGACCATCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGTAACCTTATCTGGCAGCTGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTCTTCTACCAAAATGCGTATTATTGACTTTGGAAGTGGACTTGATGAATACACATTAAATAATTTGTATGGTTCTACTGGGCCTTCGAGAGCTGAGCAAACCTATGAGTATACGCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCGACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCAGATGTTTTTCAGATAAATGCTTTAACACGGACTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAAGGAGCTGGCATATAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATGACACAGTGAACCAAGTTGGAGTTTCACCTGCATCTTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAGGAATCGAGATCCCCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGTCGTTTGTTACATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGCAGAGAGTGA 3216 0.4188 MIPKTPSEYLSFALGFLLCATVPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSEYDSPPKTTARCQIAMLQGHRKSQEDRALCVLDVRIPFPSVDGIKEVAVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDVAFSVISKTSTGAWLHKRDRDHANLLHRWKEILGSEWHGLHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNFHSGSTATIVLVADDKILVANIGDSKAILCSKNFQSPKEAKDLLLKLYRQKEHDGSVSMWDREKYKMASSHGLTHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKKGSMDNVAAIVIPLESIKSSVNSRRGSYIGKRDAGFPFGVQESSFKSSGNGILSNLMHLEHPHLVDTKLKRILVEVKDGDFGCFYLAENLDEIEDSKQIAKKVDWDDYLYELPPPPPDSLSQHPTSGGLVDLYNNQNFCFDYGPTINEPEDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWNCYQDTNVEKENRDDTNTTNSTTTSDCQNGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEVFLNASTCFEDPLSTGKSNCVLESSHENSFPNKFRPQRTLYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYSMEDAYGTAEQERLEQAKHAQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNSSTKMRIIDFGSGLDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRTLLDQHLEGWNEGVKELAYKLRSFMELCILIPGISRSSSFSKKYDTVNQVGVSPASWKCSEEFFSRQIRNRDPLKIGFSNIWALRLVRRLLHWDPEDRPSIDEALQHPYFQHPRRE 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1830g00009 1071 CDD PP2Cc 74 440 IPR001932 -
Vium1830g00009 1071 SMART serkin_6 616 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00009 1071 SUPERFAMILY PP2C-like 64 442 IPR036457 -
Vium1830g00009 1071 Pfam Protein kinase domain 812 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00009 1071 ProSiteProfiles PPM-type phosphatase domain profile. 67 440 IPR001932 -
Vium1830g00009 1071 SUPERFAMILY Protein kinase-like (PK-like) 615 1067 IPR011009 -
Vium1830g00009 1071 Pfam Protein phosphatase 2C 200 433 IPR001932 -
Vium1830g00009 1071 SMART PP2C_4 59 438 IPR001932 -
Vium1830g00009 1071 Gene3D Transferase(Phosphotransferase) domain 1 803 1066 - -
Vium1830g00009 1071 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Vium1830g00009 1071 PANTHER PROTEIN PHOSPHATASE 63 439 IPR015655 GO:0004722|GO:0006470
Vium1830g00009 1071 ProSiteProfiles Protein kinase domain profile. 616 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00009 1071 Gene3D - 63 447 IPR036457 -
Vium1830g00009 1071 FunFam uncharacterized protein LOC106771884 isoform X8 803 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1830g00009 Vium-Chr1830 75530 135138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1830g00009 680 1068 PP2C-type Phosphatase Gene Family AT3G63340 65.039 1.85e-173 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Vium1830g00009 Pkinase 6.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1830g00009 - - vum:124828073 2140.54