Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1830g00008 ATGATTCCGAAGACTCCGTCGGAGTATCTATCGTTCGCGTTAGGGTTTCTGCTTTGTGCCACAGTTCCTTTCGTTCACGCGGAGTCATCCACGTGCTTGACAGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCTCCAAAATGCCCCCGCTGGAAGCTCTCCGAATACGATTCACCTCCCAAAACCACGGCACGTTGCCAGATTGCGATGCTCCAAGGCCACAGAAAGTCTCAAGAGGATCGCGCTCTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCAGTGTGGACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTTGACGGTCATAACGGTGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGTTGCCTTTTCTGTTATTTCAAAGACATCAACAGGAGCATGGCTTCACAAGAGAGACCGTGACCATGCAAACTTACTGCATAGATGGAAGGAGATTCTAGGTTCAGAATGGCATGGACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTATTGAGGGCAGTCCATGACATTGATGCTAAATTTTCTGAGGAAGCGTCTAGAAATAATTTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATATTGTGCTCTAAAAATTTTCAGTCTCCCAAAGAGGCTAAAGATTTATTATTAAAGCTATATAGACAGAAAGAGCATGATGGTTCTGTTTCTATGTGGGATCGTGAAAAGTACAAAATGGCTTCATCCCATGGTCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTAGCAGATTTAATTGTTAATAATGCCTTAAAAAAGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTATCAAATCCTCTGTAAACTCGCGTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTCCTTCAAAAGCTCAGGTAATGGCATCTTGTCTAATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACGAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGGTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAAATAGAGGACTCCAAGCAGATTGCCAAAAAAGTTGACTGGGATGACTATTTGTATGAACTACCTCCACCTCCACCCGATTCCCTTTCTCAGCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAACCTGAAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATACTGATTCTAGTAATGGGTCTTCTGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGGTCATTTGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTTATCAAGATACTAATGTTGAAAAAGAGAACAGGGATGATACAAATACAACCAACAGCACAACGACTTCTGATTGTCAGAATGGTCCTTCTAATTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGTCTAAGGGAGAAGTACTTCGGAGAAGTTTTTTTAAATGCCTCTACATGCTTTGAAGATCCACTATCGACTGGAAAATCAAACTGTGTCTTGGAATCATCACATGAGAATTCATTTCCGAACAAATTTCGACCACAAAGAACCCTATATGAAGAAGGCTTGAATCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTGTCACTGTCTAAACTTCTATATTCCATGGAAGATGCATATGGTACTGCTGAGCAAGAAAGACTTGAGCAAGCTAAACACGCTCAGATACTACGACCATCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGTAACCTTATCTGGCAGCTGCTGCTGTCAACAAAGACGGACAAATATTACATTTCCCAGAATTTATTATTGATTTTTCCTGTGCTGCATATTCTTGACAATCCTCAGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTCTTCTACCAAAATGCGTATTATTGACTTTGGAAGTGGACTTGATGAATACACATTAAATAATTTGTATGGTTCTACTGGGCCTTCGAGAGCTGAGCAAACCTATGAGTATACGCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCGACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCAGATGTTTTTCAGATAAATGCTTTAACACGGACTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAAGGAGCTGGCATATAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATGACACAGTGAACCAAGTTGGAGTTTCACCTGCATCTTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAGGAATCGAGATCCCCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGTCGTTTGTTACATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGCAGAGAGTGA 3303 0.4172 MIPKTPSEYLSFALGFLLCATVPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSEYDSPPKTTARCQIAMLQGHRKSQEDRALCVLDVRIPFPSVDGIKEVAVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDVAFSVISKTSTGAWLHKRDRDHANLLHRWKEILGSEWHGLHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNFHSGSTATIVLVADDKILVANIGDSKAILCSKNFQSPKEAKDLLLKLYRQKEHDGSVSMWDREKYKMASSHGLTHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKKGSMDNVAAIVIPLESIKSSVNSRRGSYIGKRDAGFPFGVQESSFKSSGNGILSNLMHLEHPHLVDTKLKRILVEVKDGDFGCFYLAENLDEIEDSKQIAKKVDWDDYLYELPPPPPDSLSQHPTSGGLVDLYNNQNFCFDYGPTINEPEDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWNCYQDTNVEKENRDDTNTTNSTTTSDCQNGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEVFLNASTCFEDPLSTGKSNCVLESSHENSFPNKFRPQRTLYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYSMEDAYGTAEQERLEQAKHAQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLSTKTDKYYISQNLLLIFPVLHILDNPQLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNSSTKMRIIDFGSGLDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRTLLDQHLEGWNEGVKELAYKLRSFMELCILIPGISRSSSFSKKYDTVNQVGVSPASWKCSEEFFSRQIRNRDPLKIGFSNIWALRLVRRLLHWDPEDRPSIDEALQHPYFQHPRRE 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1830g00008 1100 CDD PP2Cc 74 440 IPR001932 -
Vium1830g00008 1100 Pfam Protein kinase domain 855 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00008 1100 SMART serkin_6 616 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00008 1100 FunFam uncharacterized protein LOC106771884 isoform X8 847 1095 - -
Vium1830g00008 1100 ProSiteProfiles PPM-type phosphatase domain profile. 67 440 IPR001932 -
Vium1830g00008 1100 Gene3D - 63 447 IPR036457 -
Vium1830g00008 1100 ProSiteProfiles Protein kinase domain profile. 616 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00008 1100 SMART PP2C_4 59 438 IPR001932 -
Vium1830g00008 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 866 878 IPR008271 GO:0004672|GO:0006468
Vium1830g00008 1100 SUPERFAMILY PP2C-like 64 442 IPR036457 -
Vium1830g00008 1100 Gene3D Transferase(Phosphotransferase) domain 1 854 1095 - -
Vium1830g00008 1100 Pfam Protein phosphatase 2C 200 433 IPR001932 -
Vium1830g00008 1100 PANTHER PROTEIN PHOSPHATASE 63 439 IPR015655 GO:0004722|GO:0006470
Vium1830g00008 1100 SUPERFAMILY Protein kinase-like (PK-like) 615 1096 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1830g00008 Vium-Chr1830 75530 135138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1830g00008 680 1097 PP2C-type Phosphatase Gene Family AT3G63340 60.526 4.65e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Vium1830g00008 Pkinase 3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1830g00008 - - vum:124828073 2212.96