Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1830g00008 | ATGATTCCGAAGACTCCGTCGGAGTATCTATCGTTCGCGTTAGGGTTTCTGCTTTGTGCCACAGTTCCTTTCGTTCACGCGGAGTCATCCACGTGCTTGACAGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCTCCAAAATGCCCCCGCTGGAAGCTCTCCGAATACGATTCACCTCCCAAAACCACGGCACGTTGCCAGATTGCGATGCTCCAAGGCCACAGAAAGTCTCAAGAGGATCGCGCTCTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCAGTGTGGACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTTGACGGTCATAACGGTGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGTTGCCTTTTCTGTTATTTCAAAGACATCAACAGGAGCATGGCTTCACAAGAGAGACCGTGACCATGCAAACTTACTGCATAGATGGAAGGAGATTCTAGGTTCAGAATGGCATGGACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTATTGAGGGCAGTCCATGACATTGATGCTAAATTTTCTGAGGAAGCGTCTAGAAATAATTTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATATTGTGCTCTAAAAATTTTCAGTCTCCCAAAGAGGCTAAAGATTTATTATTAAAGCTATATAGACAGAAAGAGCATGATGGTTCTGTTTCTATGTGGGATCGTGAAAAGTACAAAATGGCTTCATCCCATGGTCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTAGCAGATTTAATTGTTAATAATGCCTTAAAAAAGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTATCAAATCCTCTGTAAACTCGCGTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTCCTTCAAAAGCTCAGGTAATGGCATCTTGTCTAATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACGAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGGTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAAATAGAGGACTCCAAGCAGATTGCCAAAAAAGTTGACTGGGATGACTATTTGTATGAACTACCTCCACCTCCACCCGATTCCCTTTCTCAGCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAACCTGAAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATACTGATTCTAGTAATGGGTCTTCTGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGGTCATTTGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTTATCAAGATACTAATGTTGAAAAAGAGAACAGGGATGATACAAATACAACCAACAGCACAACGACTTCTGATTGTCAGAATGGTCCTTCTAATTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGTCTAAGGGAGAAGTACTTCGGAGAAGTTTTTTTAAATGCCTCTACATGCTTTGAAGATCCACTATCGACTGGAAAATCAAACTGTGTCTTGGAATCATCACATGAGAATTCATTTCCGAACAAATTTCGACCACAAAGAACCCTATATGAAGAAGGCTTGAATCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTGTCACTGTCTAAACTTCTATATTCCATGGAAGATGCATATGGTACTGCTGAGCAAGAAAGACTTGAGCAAGCTAAACACGCTCAGATACTACGACCATCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGTAACCTTATCTGGCAGCTGCTGCTGTCAACAAAGACGGACAAATATTACATTTCCCAGAATTTATTATTGATTTTTCCTGTGCTGCATATTCTTGACAATCCTCAGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTCTTCTACCAAAATGCGTATTATTGACTTTGGAAGTGGACTTGATGAATACACATTAAATAATTTGTATGGTTCTACTGGGCCTTCGAGAGCTGAGCAAACCTATGAGTATACGCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCGACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCAGATGTTTTTCAGATAAATGCTTTAACACGGACTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAAGGAGCTGGCATATAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATGACACAGTGAACCAAGTTGGAGTTTCACCTGCATCTTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAGGAATCGAGATCCCCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGTCGTTTGTTACATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGCAGAGAGTGA | 3303 | 0.4172 | MIPKTPSEYLSFALGFLLCATVPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSEYDSPPKTTARCQIAMLQGHRKSQEDRALCVLDVRIPFPSVDGIKEVAVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDVAFSVISKTSTGAWLHKRDRDHANLLHRWKEILGSEWHGLHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNFHSGSTATIVLVADDKILVANIGDSKAILCSKNFQSPKEAKDLLLKLYRQKEHDGSVSMWDREKYKMASSHGLTHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKKGSMDNVAAIVIPLESIKSSVNSRRGSYIGKRDAGFPFGVQESSFKSSGNGILSNLMHLEHPHLVDTKLKRILVEVKDGDFGCFYLAENLDEIEDSKQIAKKVDWDDYLYELPPPPPDSLSQHPTSGGLVDLYNNQNFCFDYGPTINEPEDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWNCYQDTNVEKENRDDTNTTNSTTTSDCQNGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEVFLNASTCFEDPLSTGKSNCVLESSHENSFPNKFRPQRTLYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYSMEDAYGTAEQERLEQAKHAQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLSTKTDKYYISQNLLLIFPVLHILDNPQLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNSSTKMRIIDFGSGLDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRTLLDQHLEGWNEGVKELAYKLRSFMELCILIPGISRSSSFSKKYDTVNQVGVSPASWKCSEEFFSRQIRNRDPLKIGFSNIWALRLVRRLLHWDPEDRPSIDEALQHPYFQHPRRE | 1100 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1830g00008 | 1100 | CDD | PP2Cc | 74 | 440 | IPR001932 | - | |
Vium1830g00008 | 1100 | Pfam | Protein kinase domain | 855 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium1830g00008 | 1100 | SMART | serkin_6 | 616 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium1830g00008 | 1100 | FunFam | uncharacterized protein LOC106771884 isoform X8 | 847 | 1095 | - | - | |
Vium1830g00008 | 1100 | ProSiteProfiles | PPM-type phosphatase domain profile. | 67 | 440 | IPR001932 | - | |
Vium1830g00008 | 1100 | Gene3D | - | 63 | 447 | IPR036457 | - | |
Vium1830g00008 | 1100 | ProSiteProfiles | Protein kinase domain profile. | 616 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium1830g00008 | 1100 | SMART | PP2C_4 | 59 | 438 | IPR001932 | - | |
Vium1830g00008 | 1100 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 866 | 878 | IPR008271 | GO:0004672|GO:0006468 | |
Vium1830g00008 | 1100 | SUPERFAMILY | PP2C-like | 64 | 442 | IPR036457 | - | |
Vium1830g00008 | 1100 | Gene3D | Transferase(Phosphotransferase) domain 1 | 854 | 1095 | - | - | |
Vium1830g00008 | 1100 | Pfam | Protein phosphatase 2C | 200 | 433 | IPR001932 | - | |
Vium1830g00008 | 1100 | PANTHER | PROTEIN PHOSPHATASE | 63 | 439 | IPR015655 | GO:0004722|GO:0006470 | |
Vium1830g00008 | 1100 | SUPERFAMILY | Protein kinase-like (PK-like) | 615 | 1096 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1830g00008 | Vium-Chr1830 | 75530 | 135138 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1830g00008 | 680 | 1097 | PP2C-type Phosphatase Gene Family | AT3G63340 | 60.526 | 4.65e-167 | 495 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_GSKL | Vium1830g00008 | Pkinase | 3e-22 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1830g00008 | - | - | vum:124828073 | 2212.96 |