Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1830g00007 ATGATTCCGAAGACTCCGTCGGAGTATCTATCGTTCGCGTTAGGGTTTCTGCTTTGTGCCACAGTTCCTTTCGTTCACGCGGAGTCATCCACGTGCTTGACAGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCTCCAAAATGCCCCCGCTGGAAGCTCTCCGAATACGATTCACCTCCCAAAACCACGGCACGTTGCCAGATTGCGATGCTCCAAGGCCACAGAAAGTCTCAAGAGGATCGCGCTCTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCAGTGTGGACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTTGACGGTCATAACGGTGCAGAAGCTAGTGAGATGGCATCGAAACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGTTGCCTTTTCTGTTATTTCAAAGACATCAACAGGAGCATGGCTTCACAAGAGAGACCGTGACCATGCAAACTTACTGCATAGATGGAAGGAGATTCTAGGTTCAGAATGGCATGGACTGCATTTTGAAAGGTTTCAGAATACATTTTCTCCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTATTGAGGGCAGTCCATGACATTGATGCTAAATTTTCTGAGGAAGCGTCTAGAAATAATTTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATATTGTGCTCTAAAAATTTTCAGTCTCCCAAAGAGGCTAAAGATTTATTATTAAAGCTATATAGACAGAAAGAGCATGATGGTTCTGTTTCTATGTGGGATCGTGAAAAGTACAAAATGGCTTCATCCCATGGTCTCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTAGCAGATTTAATTGTTAATAATGCCTTAAAAAAGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTATCAAATCCTCTGTAAACTCGCGTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTCCTTCAAAAGCTCAGGTAATGGCATCTTGTCTAATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACGAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGGTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAAATAGAGGACTCCAAGCAGATTGCCAAAAAAGTTGACTGGGATGACTATTTGTATGAACTACCTCCACCTCCACCCGATTCCCTTTCTCAGCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAACCTGAAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATACTGATTCTAGTAATGGGTCTTCTGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGGTCATTTGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTTATCAAGATACTAATGTTGAAAAAGAGAACAGGGATGATACAAATACAACCAACAGCACAACGACTTCTGATTGTCAGAATGGTCCTTCTAATTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGTCTAAGGGAGAAGTACTTCGGAGAAGTTTTTTTAAATGCCTCTACATGCTTTGAAGATCCACTATCGACTGGAAAATCAAACTGTGTCTTGGAATCATCACATGAGAATTCATTTCCGAACAAATTTCGACCACAAAGAACCCTATATGAAGAAGGCTTGAATCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTGTCACTGTCTAAACTTCTATATTCCATGGAAGATGCATATGGTACTGCTGAGCAAGAAAGACTTGAGCAAGCTAAACACGCTCAGATACTACGACCATCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGTAACCTTATCTGGCAGCTGCTGCTGTCAACAAAGACGGACAAATATTACATTTCCCAGAATTTATTATTGATTTTTCCTGTGCTGCATATTCTTGACAATCCTCAGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTCTTCTACCAAAATGCGTATTATTGACTTTGGAAGTGGACTTGATGAATACACATTAAATAATTTGTATGGTTCTACTGGGCCTTCGAGAGCTGAGCAAACCTATGAGTATACGCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCGACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCAGATGTTTTTCAGATAAATGCTTTAACACGGACTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAAGGAGCTGGCATATAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATGACACAGTGAACCAAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGCAGAGAGTGA 3165 0.4177 MIPKTPSEYLSFALGFLLCATVPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSEYDSPPKTTARCQIAMLQGHRKSQEDRALCVLDVRIPFPSVDGIKEVAVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDVAFSVISKTSTGAWLHKRDRDHANLLHRWKEILGSEWHGLHFERFQNTFSPNFDDSFHLEILKEALLRAVHDIDAKFSEEASRNNFHSGSTATIVLVADDKILVANIGDSKAILCSKNFQSPKEAKDLLLKLYRQKEHDGSVSMWDREKYKMASSHGLTHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKKGSMDNVAAIVIPLESIKSSVNSRRGSYIGKRDAGFPFGVQESSFKSSGNGILSNLMHLEHPHLVDTKLKRILVEVKDGDFGCFYLAENLDEIEDSKQIAKKVDWDDYLYELPPPPPDSLSQHPTSGGLVDLYNNQNFCFDYGPTINEPEDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWNCYQDTNVEKENRDDTNTTNSTTTSDCQNGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEVFLNASTCFEDPLSTGKSNCVLESSHENSFPNKFRPQRTLYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYSMEDAYGTAEQERLEQAKHAQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLSTKTDKYYISQNLLLIFPVLHILDNPQLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNSSTKMRIIDFGSGLDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRTLLDQHLEGWNEGVKELAYKLRSFMELCILIPGISRSSSFSKKYDTVNQEDRPSIDEALQHPYFQHPRRE 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1830g00007 1054 CDD PP2Cc 74 440 IPR001932 -
Vium1830g00007 1054 Pfam Protein phosphatase 2C 200 433 IPR001932 -
Vium1830g00007 1054 Gene3D Transferase(Phosphotransferase) domain 1 854 1049 - -
Vium1830g00007 1054 ProSiteProfiles PPM-type phosphatase domain profile. 67 440 IPR001932 -
Vium1830g00007 1054 Gene3D - 63 447 IPR036457 -
Vium1830g00007 1054 SMART serkin_6 616 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00007 1054 SUPERFAMILY PP2C-like 64 442 IPR036457 -
Vium1830g00007 1054 SMART PP2C_4 59 438 IPR001932 -
Vium1830g00007 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 866 878 IPR008271 GO:0004672|GO:0006468
Vium1830g00007 1054 PANTHER PROTEIN PHOSPHATASE 63 439 IPR015655 GO:0004722|GO:0006470
Vium1830g00007 1054 Pfam Protein kinase domain 855 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1830g00007 1054 SUPERFAMILY Protein kinase-like (PK-like) 615 1050 IPR011009 -
Vium1830g00007 1054 ProSiteProfiles Protein kinase domain profile. 616 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1830g00007 Vium-Chr1830 75530 135139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1830g00007 680 1051 PP2C-type Phosphatase Gene Family AT3G63340 52.899 3.29e-132 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Vium1830g00007 Pkinase 1.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1830g00007 - - vum:124828073 2093.93