Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1830g00006 ATGAATTATATATATCCAGTGAAAGAAGAATGCTTGGAATCAGCACTAACACCATCATCATCATATCAGTTGGAATCAGCACTACCACCATCATCATCATATCAGTTGGAATCAGCACTACCACCATCATCATCATATCAGTTAGGTAATGAGTATCCACCAAAGCCAATCGAGGGACTTCATTACGCTGGACCACCACCATTCCTCACAAAAACTTTTGATGTTGTTGATGACCCAGTTACCAACCACGTAATTTCTTGGAGCAGAGACGGCACAAGCTTTGTGGTCTGGGATCCACATACCTTCTCTGCAAGTCTCCTTCCCAGATACTTCAAGCACAGCAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCAGATAGATGGCAGTTTGCAAACGAAGGATTCATCAGAGGGCATAAGCATTTGTTGAAAAGCATAAGGAGAAGGAGGGCACCTTCCCAACTAACACAAAGTCACAGTGTTGAAGTTGGACGTTTTGAGTTAGACAAAGAGGTTGATCGTTTGAAGCACGAGAAGATAGTGTTGATGATGGAGCTTATGAATCTAAGACAGCAGCAGCAGAAAGCCAGAATGTGCATTAAGGAGATGGAGCAAAGGTTACAAGTGACTGAAATCAAGCAGAAACATATGATGGCTTTCTTAGCTAGAGCCATAAAAAATCCTGCCTTCATACACCAACTCCTAAAGAAAGAGAAGAGAAAGGATCTTGAAGAAGCCTTGACTAAAAAGAGAAGACAAATTAAGCAAGGAGTTAGAGGTATTGGAGAATCAAGTAGTAGGGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGGCCTTGGAATTTGGGGAGTACGATTGTGATTTTGGAGTGTCAGAGTTGGAAAAGTTAGCTATGGAAATGCAGGGATGTGGAAAGGGTAGGATAGACCGGGAGGTAGAACCTGAGGCACTAGAATCACAAGAGAGACTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTGATGTTCAGTGAGAAATTTGATGGTCGATTTGACATTCCAACTACTGAAGATAACGATGAAGATGTTGTCAACATATTGGCCAATGAACTTGGTTGCTTGGATTCAAGTCATTAA 1143 0.4147 MNYIYPVKEECLESALTPSSSYQLESALPPSSSYQLESALPPSSSYQLGNEYPPKPIEGLHYAGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHTFSASLLPRYFKHSNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGHKHLLKSIRRRRAPSQLTQSHSVEVGRFELDKEVDRLKHEKIVLMMELMNLRQQQQKARMCIKEMEQRLQVTEIKQKHMMAFLARAIKNPAFIHQLLKKEKRKDLEEALTKKRRQIKQGVRGIGESSSRGEGRSSVKVEALEFGEYDCDFGVSELEKLAMEMQGCGKGRIDREVEPEALESQERLDRVLDEEFWEELMFSEKFDGRFDIPTTEDNDEDVVNILANELGCLDSSH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1830g00006 380 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 54 267 IPR027725 -
Vium1830g00006 380 SMART hsfneu3 64 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 FunFam Heat shock transcription factor 1 61 158 - -
Vium1830g00006 380 Pfam HSF-type DNA-binding 68 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 Coils Coil 244 264 - -
Vium1830g00006 380 Gene3D - 61 158 IPR036388 -
Vium1830g00006 380 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 PRINTS Heat shock factor (HSF) domain signature 68 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 ProSitePatterns HSF-type DNA-binding domain signature. 107 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1830g00006 380 SUPERFAMILY "Winged helix" DNA-binding domain 64 157 IPR036390 -
Vium1830g00006 380 Coils Coil 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1830g00006 Vium-Chr1830 63036 65556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1830g00006 54 379 HSF AT3G22830 47.790 4.66e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium1830g00006 HSF_DNA-bind 3.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1830g00006 K09419 - gmx:100811945 533.872