Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1830g00005 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCTGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAACAATCATTTCTCCACAAGAACCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACTAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCACAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCGGAACCTTCATGCGTTCATCACAACCCCTCAAGGGCTCTCGGGGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCCGTTCAGTCCGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAACTGGCCACAAGCACCACAAACCCTTTGGTCCAATCCCTATTCCTTTTCCCAACCCAACAACACAACAACAACAATATCAACACCACCAACTTCATCAATCCCTGGGACCCAAACCCTAACCCTAGCAACCTTCCAACCCTCCACAACGCCATCAAATCTGAATCTCACAACTTCCACACTCCAATCTTCAGCACCACCACCACCAACAACAACATCTCTTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATGATAACCTCACCCTACAGTGACCTCCACGTACGCCCCTCCAACGCTGCCACGTCAGCGCACCTCTCAGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATAACGGGCCCCACTCACGTCACTCCGCTCAGCATGGCCGAGTTGGGAACCGGATCGACTCAGCTGGACTCGGTGCCACCCGAACGCTACATGAACATGAGGGGCCTCACGAATAGCGACGGTCTGACCAGGGACTTTCTTGGCCTCACCAATGGCGACGCGGTGAACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAAGCCTACGATCACCATCATAATCATAGCAACTCGCTTTTCAAGCCACAGCATGGGTTTGGATTCCTTGGGACAACCACTGGACCCGAATCCTGGGGAAATTGTGAGTGA 1350 0.497 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTTIISPQEPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATSTTNPLVQSLFLFPTQQHNNNNINTTNFINPWDPNPNPSNLPTLHNAIKSESHNFHTPIFSTTTTNNNISSPSLLLHHPPKTMITSPYSDLHVRPSNAATSAHLSATALLQKAATFGAAAITGPTHVTPLSMAELGTGSTQLDSVPPERYMNMRGLTNSDGLTRDFLGLTNGDAVNVSIDVKDMLTFTGGSVEYNHYHHQAYDHHHNHSNSLFKPQHGFGFLGTTTGPESWGNCE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1830g00005 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 409 IPR031140 -
Vium1830g00005 449 Gene3D Classic Zinc Finger 142 207 - -
Vium1830g00005 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Vium1830g00005 449 FunFam protein indeterminate-domain 12-like 52 120 - -
Vium1830g00005 449 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Vium1830g00005 449 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Vium1830g00005 449 Gene3D Classic Zinc Finger 52 121 - -
Vium1830g00005 449 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Vium1830g00005 449 SMART c2h2final6 73 95 IPR013087 -
Vium1830g00005 449 SMART c2h2final6 114 144 IPR013087 -
Vium1830g00005 449 SMART c2h2final6 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1830g00005 Vium-Chr1830 22047 26276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1830g00005 17 418 IDZ Gene Family AT4G02670 50.585 5.82e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1830g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1830g00005 K25870 - gmx:100780056 748.814