Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium182g00009 ATGGAAGATTTTTGCAATGAGATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATATTGTTTCTCGGTGCATGCACAAAGCCTCCACGGTTGTCAATGGTTACAGAATATATGGAATTGGGATCGTTGTATTACTTGATACATTTAAGTGGTCAAAAGAAGAAGCTTAATTGGCGGAGAAGACTAAGGATGTTACGTGACATATGCAAGGGTTTGATGTGCATACATCGAATGAAGGTTGTTCACCGTGATCTGAAAAGCGCAAATTGTCTGGTGAATAAGCATTGGACTGTGAAAATATGTGATTTTGGGCTTTCAAGATTAATGACAGAGTCTCCTATGAGAGATTCTTCCTCGGCTGGAACTCCGGAATGGATGGCTCCTGAGCTCATTCGAAATGAACCATTCACAGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAACTATGCACATTGAGCAGACCATGGGAAGGAATACCACCTGAGAGGGTGGTCTATTCCGTTGCAAATGAGGCTTCCAGATTGGAAATACCAGAAGGCCCTCTAGGAAGGCTTATTTCAGATTGTTGGGCAGAATCCCATGAGCGGCCAAGTTGTGAGGAGATTCTTTCTCGTTTGGTGGACATCGAGTACTCCTTGTGTTGA 657 0.4292 MEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMELGSLYYLIHLSGQKKKLNWRRRLRMLRDICKGLMCIHRMKVVHRDLKSANCLVNKHWTVKICDFGLSRLMTESPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYSVANEASRLEIPEGPLGRLISDCWAESHERPSCEEILSRLVDIEYSLC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium182g00009 218 Pfam Protein tyrosine and serine/threonine kinase 2 210 IPR001245 GO:0004672|GO:0006468
Vium182g00009 218 PRINTS Tyrosine kinase catalytic domain signature 75 93 IPR001245 GO:0004672|GO:0006468
Vium182g00009 218 PRINTS Tyrosine kinase catalytic domain signature 36 49 IPR001245 GO:0004672|GO:0006468
Vium182g00009 218 PRINTS Tyrosine kinase catalytic domain signature 122 132 IPR001245 GO:0004672|GO:0006468
Vium182g00009 218 PRINTS Tyrosine kinase catalytic domain signature 141 163 IPR001245 GO:0004672|GO:0006468
Vium182g00009 218 CDD STKc_MAP3K-like 1 210 - -
Vium182g00009 218 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Vium182g00009 218 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 210 - -
Vium182g00009 218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 81 93 IPR008271 GO:0004672|GO:0006468
Vium182g00009 218 SMART serkin_6 2 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium182g00009 218 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium182g00009 218 SUPERFAMILY Protein kinase-like (PK-like) 2 210 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium182g00009 Vium-Chr182 129488 131723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium182g00009 1 218 MAP Kinase Kinase Kinase AT2G31010 83.028 3.73e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vium182g00009 PK_Tyr_Ser-Thr 3.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium182g00009 - - vum:124839195 456.832