Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1829g00036 ATGATCAACCGTAAGTCTTATGTTTGCCTTGCAAAGGCAATTCCAGCTACGTTGGTGCTTTTGCTGGCTATGTCTGAAGGTATTTCAGGACTAACACAAGCTGAAGCTCTTCTTAGGTGGAAACAAAGTCTACCTGATCAACCCATTTTGGAGTCGTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCTCCATGTTCATGGCGAGGTATCACGTGTGATTCCCAAGGCACTGTCACTGTCATAAACTTGGCTTATACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCTATCCTTCTTCGTCTTGATCTCAAAGTAAACAATCTCACTGGCACCATACCACAAAACATTGGGGTGCTCTCAAACCTCCAGTTTCTTGACCTTTCCACCAACTATTTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTGTCGAGAAATGATGTATCAGGGGTATTAGACCCTTCCCTGTTTCCCGATGGATCAAACAGCCCCAAAAGTGGCCTCATTGGTATCAGGAACCTCCTCTTTCAGGACACCCTGCTGGGTGGCAGAATCCCAGATGAAATAGGGAACATTAGAAACCTGACTCTTCTAGCTCTTGATGGAAACAGCTTCGATGGCCCTATTCCGCCTTCTCTTGGCAACTGCACGCATTTAAGCATTCTCAGAATGCCTCAAAACCAACTCTCAGGGCCAATACCTCCCAGTATCGGTAAATTAACCAATCTAACCGATGTTCGCTTTTTCTCCAACAACTTAAATGGTACTGTTCCCCCAGAATTAGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTGGTTGGTGAGTTACCACCAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCTATTCCAAGAAGCCTTAGAGACTGTCCATCCTTGTACAGGGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCTGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGTCATAACAGTGTGGAAGGTGACCTCACTGCAAATTGGGGTGCCTGCAAAAGCTTGCAATTTCTCAACATGGCTGGAAATAGAGTAAGTGGTTACATTCCAGGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTGCACAGATTGGAAATTCCTCCAACTTGTTTCAATTAAATTTGAGTGGAAACAAACTTTCTGGCATGGTACCAGTAGAAATTGGAAAGCTTTCCAATTTGCGATCCTTAGACCTCTCTATGAACATGCTACTGGGACCAATCCCCAATCAGATAGGGGACATCTCAAACTTGCAGAATTTAAATCTTAGCAACAATAACTTTAATGGCTCAATCCCTTACCAAGTTGGAAATCTTGCATCTTTACAAGATTTTTTGGACTTGAGTTTCAATGCATTTTCAGGAGTAATTCCTTCTGATCTTTGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGACAGGTTCAATCCCTGACTCCCTCAGTAAAATGGTCAGTTTGTCAGCCATCAACCTCTCCAACAACAATTTGGAGGGTCCAGTTCCCGAAGGTGGTGTGTTCAACTCTTCTCATTCCGTGGATTTGAGCAACAACGAAAATTTATGTGGAAATGTTCAAGGTTTGAAACCTTGTAATGTCTCTCTCACTAAACCTGATGGTGGTGGATCAAGTAACAAAAAGGTTGTGATCGCAATAGTTGCATCCTTGGGAGGTGCTCTTATTATTTCTTTGGTGTGTGTTGGGATTGTTTTCTTTTGCTGCAAGAGAAATTCTAGAGTAAGAAGACAAAAGAGTTCAATAAAAAAACTGAATCCATTTTCCATTTGGTACTTCAACGGCAGAGTTGTGTACGGAGACATAATCGAAGCCACCAAGAACTTTGACAACCACTATTGCATTGGGGAAGGAGCATTGGGAAAAGTTTATAAAGCAGAGATGAAAGGTCAAGTATATGCGGTGAAAAAGTTGAAGTGTGATGCAGAAAACTTAGACATTGACAGTATAAAAACCTTTCAGCATGAGGTAGAAGCGATGTCAGAAACACGCCACCGAAACATAATCAAGCTTTATGGATTTTGCTCTGAAGGGATGCACACATTTTTAATCTATGAGTACATGAACAGAGGGAACTTATCAGACATGCTGAAAGATGAGAAGGAAGCATTAGAACTAGATTGGCCTAAGAGGGTTGACATTGTGAAAGGTGTGGCAAGCGCTTTGTCCTATATGCATCACGATTGTTCTCCCCCTTTAATTCACAGAGACATATCAAGCAACAACATTTTACTCTCCTACGATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCCAGGTTTCTGAAACCGGATTCTCCCATTTGGACATCATTTGCCGGTACATATGGTTATGCTGCTCCAGAGCTTGCATACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGAGTTTTGGCTTTGGAGATTCTCACGGGAAAGCACCCTGGTGATATTGTTTCCTACATGCAAAGTTGTAGTGAACAGAAAGTAAACATGAAAGAGATTTTAGACCCTCGTCTCTCGAGTCCTTCCAAGAACAATATTTTGAAGGAATTGGCATTGATTGCAAACCTTGCTCTTGCATGTTTACAAACCAATCCTCAATCTCGACCAACTATGCGATACATAGCTCAACTTCTTGAAATGGATACTGCTGATCTGAGATAG 2853 0.4206 MINRKSYVCLAKAIPATLVLLLAMSEGISGLTQAEALLRWKQSLPDQPILESWVINSTATTQTPCSPCSWRGITCDSQGTVTVINLAYTGLAGTLQNLNLSVFPILLRLDLKVNNLTGTIPQNIGVLSNLQFLDLSTNYFNGTLPLSIANLTQVFELDVSRNDVSGVLDPSLFPDGSNSPKSGLIGIRNLLFQDTLLGGRIPDEIGNIRNLTLLALDGNSFDGPIPPSLGNCTHLSILRMPQNQLSGPIPPSIGKLTNLTDVRFFSNNLNGTVPPELGNLSSLIVLHLAENNLVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSHNSVEGDLTANWGACKSLQFLNMAGNRVSGYIPGEIFQLDQLQELDLSSNQISGEIPAQIGNSSNLFQLNLSGNKLSGMVPVEIGKLSNLRSLDLSMNMLLGPIPNQIGDISNLQNLNLSNNNFNGSIPYQVGNLASLQDFLDLSFNAFSGVIPSDLWKLSNLVSLNISHNNLTGSIPDSLSKMVSLSAINLSNNNLEGPVPEGGVFNSSHSVDLSNNENLCGNVQGLKPCNVSLTKPDGGGSSNKKVVIAIVASLGGALIISLVCVGIVFFCCKRNSRVRRQKSSIKKLNPFSIWYFNGRVVYGDIIEATKNFDNHYCIGEGALGKVYKAEMKGQVYAVKKLKCDAENLDIDSIKTFQHEVEAMSETRHRNIIKLYGFCSEGMHTFLIYEYMNRGNLSDMLKDEKEALELDWPKRVDIVKGVASALSYMHHDCSPPLIHRDISSNNILLSYDLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEILTGKHPGDIVSYMQSCSEQKVNMKEILDPRLSSPSKNNILKELALIANLALACLQTNPQSRPTMRYIAQLLEMDTADLR 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1829g00036 950 FunFam MDIS1-interacting receptor like kinase 2 754 948 - -
Vium1829g00036 950 Gene3D Ribonuclease Inhibitor 179 264 IPR032675 -
Vium1829g00036 950 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Vium1829g00036 950 SUPERFAMILY L domain-like 349 584 - -
Vium1829g00036 950 FunFam Leucine-rich repeat receptor protein kinase MSP1 637 753 - -
Vium1829g00036 950 Gene3D Phosphorylase Kinase; domain 1 635 753 - -
Vium1829g00036 950 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Vium1829g00036 950 PANTHER LEUCINE RICH REPEAT KINASE 2 229 946 - -
Vium1829g00036 950 Gene3D Transferase(Phosphotransferase) domain 1 754 948 - -
Vium1829g00036 950 SMART LRR_typ_2 400 424 IPR003591 -
Vium1829g00036 950 SMART LRR_typ_2 521 545 IPR003591 -
Vium1829g00036 950 SMART LRR_typ_2 127 151 IPR003591 -
Vium1829g00036 950 SMART LRR_typ_2 472 496 IPR003591 -
Vium1829g00036 950 SMART LRR_typ_2 448 471 IPR003591 -
Vium1829g00036 950 SMART LRR_typ_2 280 304 IPR003591 -
Vium1829g00036 950 SUPERFAMILY L domain-like 52 394 - -
Vium1829g00036 950 FunFam Leucine-rich repeat receptor-like protein kinase TDR 278 594 - -
Vium1829g00036 950 PRINTS Leucine-rich repeat signature 403 416 - -
Vium1829g00036 950 PRINTS Leucine-rich repeat signature 448 461 - -
Vium1829g00036 950 Pfam Leucine rich repeat 503 558 IPR001611 GO:0005515
Vium1829g00036 950 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Vium1829g00036 950 SUPERFAMILY Protein kinase-like (PK-like) 649 944 IPR011009 -
Vium1829g00036 950 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Vium1829g00036 950 Pfam Protein kinase domain 680 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1829g00036 950 ProSiteProfiles Protein kinase domain profile. 675 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1829g00036 950 ProSiteProfiles Leucine-rich repeat profile. 523 545 IPR001611 GO:0005515
Vium1829g00036 950 SMART serkin_6 675 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1829g00036 950 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 182 272 - -
Vium1829g00036 950 FunFam Nuclear pore complex protein NUP107 31 174 - -
Vium1829g00036 950 Gene3D Ribonuclease Inhibitor 266 595 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1829g00036 Vium-Chr1829 161544 165263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1829g00036 20 847 Receptor kinase-like Gene Family AT4G08850 39.027 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1829g00036 Pkinase 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1829g00036 - - gmx:100814345 1561.58