Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1829g00035 ATGGCGAAATTTGGTTCTCCTGCAACTCACATTGAGGACACAGTTCCTCAAGTCCCATCAGCTCTTACTATCGTTGCCATCGACAATAACTTAACCGTTCTTGAATTCATCAAGAACACATGCAACCAGGATGGTATTCGAGTTCTGGCGTGCTCTGAATCTCAAAGTGCCGTGAATGCCTTACGAAAAAGAAAACAGCGTATTGATTTGATACTCGTAGAAGTTGATATGCCAATCATGAACGGCTACGAATTTCTCGAATTTATCAAGAAAGAACAAGTTAATGTTCCTCTCATAATGATGTCTTCGGATAATAGCAGGGCTTCGGTAATGAAGGCGATGGAACATGGAGCTTATGATTATTGGGTTAAACCTTTGCAGGAGTTTAATTTCACGATCATGCGGGCACGTGTATTTCAGAAGAAGTGCATGATTGCAGATAAGCTGCAAAAGGATAGTGGTTGCTTAAAAGATGATGATAAAAGAAGAGGAAGAAGTGATAATTCTGAACCGGCTTCATGTATGGTTCATAGGAGCAATAGCAACTTTGAAGAAGCCGATGTTGTTGATGAATCATGTAATCCACCTCCCACCAAGAAGCCTCGTGTTGTATGGGATCAAAAACTGAATGCTTCGTTTATCAGTGCTGTCCAAATAATTGGAATTGAAAAGGCTACGCCAAAGAAAATTCTTGAAGTCATGAATGACCCTCGTTTGGAAATAACACATATTGCCAGTCATTTGCAGAAATACAGAAAATATTTAAAACAGCAGCAACAGAAACAGGAACAGCAACAGCAACAGAAAGACATGTCTCTCGTTTCAGGGGGACAAATAGAGCGACAACAATCGAAACAGAAGGACATGTCATTGCCAAGGACGTCTGCATTGCAAACTTGTTCTGCTACTGCAATGACAAATTTTCATCCTGGTTTTACTGGTAACATGGAAGAGGAAGCTTTGGCATATGGTCATCCTTTAGCAGCCTTTCCTAACGTTGTCATTCCCGAGAATTTTTCAGAAGAACAGTCAAATCTAAATAGACAACTGCCTAACAATTTTAATGCAGAGCAAGTTTTGGCACATGATCATCCTTCAGCAACCTTTCCTAACATTGCCAGTAACCTGATATCTCAACCGGGAACTCTAGATGATGCTTCTGTATATGGATTACTTACTCCATCTGATACACCGCTATTTGTCAATCCCACTATTCTACAGATAGATACTACGCAGCAGCCGATGAATCATAATCAAATATATCCAATGAACTTTCAGCCATCTTTCACGATGATTTCTGGAAATCCAGCTTTTGCCTCCCAGAATTACAACTTTGGCATGAACATGGGTCATGGTTCTCAATCTATACAAGATGGAAATAGCATAGGTGAAGGAATTGTTGATCAATATAGCACTATAGATTCCATTTATCGTCCAGAGTTTCAAAATGCAGGTTTGCCAAGTGGTGCTGTCAGACGTTTTGCTGCAAGTGATTATAGGAGCCAAAATCCCTATATTGATGGTAACTTGTATCAGCAATGA 1542 0.4001 MAKFGSPATHIEDTVPQVPSALTIVAIDNNLTVLEFIKNTCNQDGIRVLACSESQSAVNALRKRKQRIDLILVEVDMPIMNGYEFLEFIKKEQVNVPLIMMSSDNSRASVMKAMEHGAYDYWVKPLQEFNFTIMRARVFQKKCMIADKLQKDSGCLKDDDKRRGRSDNSEPASCMVHRSNSNFEEADVVDESCNPPPTKKPRVVWDQKLNASFISAVQIIGIEKATPKKILEVMNDPRLEITHIASHLQKYRKYLKQQQQKQEQQQQQKDMSLVSGGQIERQQSKQKDMSLPRTSALQTCSATAMTNFHPGFTGNMEEEALAYGHPLAAFPNVVIPENFSEEQSNLNRQLPNNFNAEQVLAHDHPSATFPNIASNLISQPGTLDDASVYGLLTPSDTPLFVNPTILQIDTTQQPMNHNQIYPMNFQPSFTMISGNPAFASQNYNFGMNMGHGSQSIQDGNSIGEGIVDQYSTIDSIYRPEFQNAGLPSGAVRRFAASDYRSQNPYIDGNLYQQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1829g00035 513 MobiDBLite consensus disorder prediction 255 294 - -
Vium1829g00035 513 Gene3D - 21 153 - -
Vium1829g00035 513 FunFam Two-component response regulator 196 259 - -
Vium1829g00035 513 Pfam Response regulator receiver domain 24 128 IPR001789 GO:0000160
Vium1829g00035 513 ProSiteProfiles Response regulatory domain profile. 23 139 IPR001789 GO:0000160
Vium1829g00035 513 MobiDBLite consensus disorder prediction 155 175 - -
Vium1829g00035 513 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 278 IPR045279 GO:0009736
Vium1829g00035 513 Coils Coil 248 268 - -
Vium1829g00035 513 SMART REC_2 22 133 IPR001789 GO:0000160
Vium1829g00035 513 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Vium1829g00035 513 SUPERFAMILY Homeodomain-like 198 256 IPR009057 -
Vium1829g00035 513 Gene3D - 197 258 - -
Vium1829g00035 513 SUPERFAMILY CheY-like 21 139 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1829g00035 Vium-Chr1829 157183 159082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1829g00035 13 265 Response Regulator Gene Family AT4G31920 32.016 1.59e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1829g00035 Response_reg 4.6e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1829g00035 - - var:108339502 948.347