Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1829g00034 ATGGGCAAGATTTCTTCTGAGAAGAAGGTTTTTTCTGAATATCCATCAAATCTTAAGGTTCTAGCCATTGATACTGACCCTATAGTTCTTGAGTTCATCAAGAAAGTGTGTAATGAATACTGTTATGAAGTTATCACATGCACAGAATCGCTATCTGCCGCTATAATTTTGCAGGAAAAGAAGTCCACCATTGATTTGATTCTAATGGAAGTTCATATGCCACATATGGATGGCTATGAATTCTTGCTTACCACCCAAGAAATCAATGTTCCTAAACTCATGATGTCTTTCGATGATAGTAAGAAATCTGTGATGAAGACTATCAAACTTGGAGCTTGTGATTATATGATTAAGCCTTTGCATGAGGATCGGCTGAGAAACATGTGGACACATGTTGTTAGAAAATCCATGAATGAGGACAAGATGAGAAAAAATATCCGTAATAGCTTGGAAGATGATAATCAGAATTCTAGATTTGTGTTTTCTTCTAGCGATGAAATTTCAAGAGAAGTTGGTAATGCTGGTCAATCAAAGAAGCCTCGTGTAGTGTGGACAACAGATCTGCATGGGAAATTTGTCAAAGCTGTGAATCAACTTGGACTTGAAAATGCTGTGCCAAACAAGATTCAGCAACTCATGAATACGCCTCATTTGACAAGAAATCATGTTGCAAGCCATTTGCAGAAATATAGAAATGTTTTGAAGGAAAAAGCTAGGAGAGAGAAAGAGAGACAGCCAGAACCAAAAAGAGAGCAGCAATCTGTCCCAGATATACAAATGGATAATCATCATGCAGAAGAAGCTTTTGGTTTTGCACTCAGTGATCCACTTTCTATTTATCCAACCATTGCTATTCCTCAGAATTTTCCACAGACTCTAGATTCTGAATGTGGAATATGGTCTCCATATAATGCAATCTTAGCAGAAAATGAGGCTATGCTTCAGAGAAACACTGTGTCATTGGATTCATTGCAGCAGCAGCAGCAGCTGCAGCAGAACATGCAGCAGCAGCAGCAGCTGCAGCAGAACATGCAGCAGCAGCAGCAGCTGCAGCAGAACATGCAGCACAACATGCAGCAGCAGCTGCTGCAGAAGAACATGCAGTCTTCAGTGTTGCAACAGCTGCAGCAGAAGCTCCAGGAGCAGTTGCAGCAGAAGCTCCAGGAGCAGTTGCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGAACATGCAGTCTTCAGTGATGCAGAATCAAGTTCCTCTGATAAATTTTCAACCATCTTCTGTGATAATTTCTGAAAATCCATATTTGGTGATCCAGAATGATAACTTTGGCAGAAACATTGATCAGAGAAGCATTCAGTAA 1344 0.407 MGKISSEKKVFSEYPSNLKVLAIDTDPIVLEFIKKVCNEYCYEVITCTESLSAAIILQEKKSTIDLILMEVHMPHMDGYEFLLTTQEINVPKLMMSFDDSKKSVMKTIKLGACDYMIKPLHEDRLRNMWTHVVRKSMNEDKMRKNIRNSLEDDNQNSRFVFSSSDEISREVGNAGQSKKPRVVWTTDLHGKFVKAVNQLGLENAVPNKIQQLMNTPHLTRNHVASHLQKYRNVLKEKARREKERQPEPKREQQSVPDIQMDNHHAEEAFGFALSDPLSIYPTIAIPQNFPQTLDSECGIWSPYNAILAENEAMLQRNTVSLDSLQQQQQLQQNMQQQQQLQQNMQQQQQLQQNMQHNMQQQLLQKNMQSSVLQQLQQKLQEQLQQKLQEQLQQQLQQQQQQNMQSSVMQNQVPLINFQPSSVIISENPYLVIQNDNFGRNIDQRSIQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1829g00034 447 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vium1829g00034 447 Gene3D - 176 237 - -
Vium1829g00034 447 FunFam Two-component response regulator 175 237 - -
Vium1829g00034 447 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 232 IPR006447 GO:0003677
Vium1829g00034 447 Gene3D - 17 155 - -
Vium1829g00034 447 Coils Coil 365 404 - -
Vium1829g00034 447 Coils Coil 327 357 - -
Vium1829g00034 447 SMART REC_2 18 129 IPR001789 GO:0000160
Vium1829g00034 447 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
Vium1829g00034 447 CDD REC_typeB_ARR-like 20 133 - -
Vium1829g00034 447 MobiDBLite consensus disorder prediction 236 257 - -
Vium1829g00034 447 SUPERFAMILY CheY-like 16 145 IPR011006 -
Vium1829g00034 447 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 351 IPR045279 GO:0009736
Vium1829g00034 447 Pfam Myb-like DNA-binding domain 181 231 IPR001005 -
Vium1829g00034 447 SUPERFAMILY Homeodomain-like 177 235 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1829g00034 Vium-Chr1829 151691 153492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1829g00034 7 236 Response Regulator Gene Family AT4G31920 39.149 1.75e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium1829g00034 Response_reg 5.2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1829g00034 - - vum:124828058 716.457