Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1829g00022 ATGGAAGCGGCGGTGGTGGACGTCGGTTCTAAGCTTCTCAAAGTCGGTTTTGCAATTCCCGACCAGACTCCGGCCATGATAATTCCCACTAAAATGAAACAACTGCTTGATGATGGATCGGCCACTGATAGCTCACTGGCTGAAAATGTCACTGTTGATCCAGTTGTGCGGGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCAGCATGTTTTATATACTGGTCTGGGATGGGAAATTGGCAATGAAGGTCAAATACTCTTTACAGATCCACTTTGTACCCCAAAGGCCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGTATCTCAGGCTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCATATTGCCTCAAGAAGATTTGAATTTGGAGGTATTGATCTAACTAATTTCCTAGCTCAAGAACTAGGCAAGACCAATCCAAAAGTAAATATCAGCCTGTCTGATGTGGAGAAAATGAAAGAGCAGTACTCATGCTGTGCTGTAGATGAGTTAGCTTATCAAAAGACCCAATATTTGTGTCCTGTGGAGGAGCATACCCTTCCTGATGGACAGGTGATACGAATTGGGAGAGAAAGATTTACGGTCGGGGAAGCTTTATTCCGGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGACAGCTGCTGGAGAATACGGTGGTTTGTGGTGCCACTTCATCTATGGCAGGTTTTGAAGAGAGATTTCAGAAAGAATCTAGCTTAAGTTCATCTGCCGTTCAACCTACCCTTGTTAAGCCTCCAGAATATATGCCAGAAAATTTAACCATGTATTCTGCTTGGGTGGGAGGTGCAATACTTGCGAAAGTGGTATTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCTTCCATTATTCACCGGAAATGCTTCTGA 1086 0.43 MEAAVVDVGSKLLKVGFAIPDQTPAMIIPTKMKQLLDDGSATDSSLAENVTVDPVVRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKTNPKVNISLSDVEKMKEQYSCCAVDELAYQKTQYLCPVEEHTLPDGQVIRIGRERFTVGEALFRPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGATSSMAGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIIHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1829g00022 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Vium1829g00022 361 Pfam Actin 2 361 IPR004000 -
Vium1829g00022 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Vium1829g00022 361 FunFam Actin-related protein 7 4 127 - -
Vium1829g00022 361 FunFam Actin-related protein 7 165 252 - -
Vium1829g00022 361 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Vium1829g00022 361 Gene3D - 5 355 - -
Vium1829g00022 361 PRINTS Actin signature 100 113 IPR004000 -
Vium1829g00022 361 PRINTS Actin signature 217 233 IPR004000 -
Vium1829g00022 361 PRINTS Actin signature 45 67 IPR004000 -
Vium1829g00022 361 PRINTS Actin signature 125 144 IPR004000 -
Vium1829g00022 361 SMART actin_3 1 361 IPR004000 -
Vium1829g00022 361 Gene3D - 123 324 - -
Vium1829g00022 361 PANTHER ACTIN 4 354 IPR004000 -
Vium1829g00022 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1829g00022 Vium-Chr1829 99926 106326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1829g00022 5 361 Cytoskeleton Gene Families AT3G12110 35.467 4.35e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1829g00022 K16615 - gmx:100813266 686.411