Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1829g00002 ATGGGCAAAGCAAGAACTTGTTGTGTCCTTCTTCTATCCCTTCTCACTCTTTCATTCTTTGTGCCTAAAACCTCTGCAAATAAGCAACTTCAAACTCTTAACAAACTGCAAAAGTCCATGTTTTTCAAAGGAATTTCACAAACTGAGAGGACTGAGTTTGAGGTTGAAGAGGTTGTTCTGGACGGCATTGTCGATTCTCAAAAGGGTCTCAAAGAAAAAGACAGAATTGGAAGACTCCCAGGGCAACCCCAAGTGAGTTTTTCTCAGTATGGAGGCTATGTGACTGTCGACAAAGTTGCTGGTCGTGCCTTCTACTATTACTTTGTCGAAGCTCAACGTTCTAAACACACACTCCCTCTTCTTCTTTGGCTCAATGGAGGCCCGGGATGTTCTTCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGATGGAAAAACACTGCACACAAATGCATTTTCATGGAACAGAGTTGCCAATGTTCTGTTCCTGGAATCACCTGCTGGAGTAGGGTTTTCATACTCAAACAAATCAGCAGATTATGCTTTGAATGGAGATAAGAAAACAGCTGCAGATAATTATTTATTCTTGGTGAATTGGTTGGAGAGATTTCCTGAGTATAAAAACAGAGATTTCTTCATTGCTGGAGAGAGCTATGCTGGGCATTATGTGCCTCAACTTGCATACACCATTCTCCATCATAACAAAAAGGCAAATAAAGCAATCATCAACTTCAAAGGAATCTTGATTGGGAATGCAGTGATCAACGAAGAAACTGATTCGCCAGGAATGTACGATTATCTTTCTAGCCATGCAATCATTTCAGATGAAGCAGCTTATATCAGTAAATCTTGTGAGTCCTCATCAAAGATTGGGAAAAGTCAGTGCGATGCAGCAGAAACAGAAGTTGATAATAACATTGGATATATCGACTTATATAATATTTATGCTCCACTCTGCAATAATACAAAACTCACATCCCGGCCAAAAAGATATTCTATTGTCACTGATCCATGTAGTGAGAATTATGTGCATGCGTATATTAATAGAAAAGATGTTCAAAAGGCTCTCCATGCCAATGTCACCAATCTCAAATATGACTGGGAACCCTGCAGCGAAGTCATTACCAAGTGGGTAGATAGTGCTTCAACAGTTCTTCCAATTTTACATGAATTACTCAACAATGGCCTCAGGGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTGCCTATTACTTCAACCAAGTATTCGGTTAAGAAGATGGAGCTTCCCGTTGAAAAAGTTTGGCACCCTTGGTTTTCCCATGGAGAGGTTGGTGGATTTGCAGAAGTATATAAGGGAGGCCTAACATTAGCTACGGTGAGAGAAGCAGGGCATCAAGTGCCAAGTTATCAACCCGCAAGAGCCCTAACTTTGATCAAATATTTCTTAGACGGCACTCCTCTTCCTGGTCCTCCCAAAAGACATACCTAG 1491 0.4111 MGKARTCCVLLLSLLTLSFFVPKTSANKQLQTLNKLQKSMFFKGISQTERTEFEVEEVVLDGIVDSQKGLKEKDRIGRLPGQPQVSFSQYGGYVTVDKVAGRAFYYYFVEAQRSKHTLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHTNAFSWNRVANVLFLESPAGVGFSYSNKSADYALNGDKKTAADNYLFLVNWLERFPEYKNRDFFIAGESYAGHYVPQLAYTILHHNKKANKAIINFKGILIGNAVINEETDSPGMYDYLSSHAIISDEAAYISKSCESSSKIGKSQCDAAETEVDNNIGYIDLYNIYAPLCNNTKLTSRPKRYSIVTDPCSENYVHAYINRKDVQKALHANVTNLKYDWEPCSEVITKWVDSASTVLPILHELLNNGLRVWIFSGDTDGRVPITSTKYSVKKMELPVEKVWHPWFSHGEVGGFAEVYKGGLTLATVREAGHQVPSYQPARALTLIKYFLDGTPLPGPPKRHT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1829g00002 496 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Vium1829g00002 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 FunFam Carboxypeptidase 390 485 - -
Vium1829g00002 496 Gene3D alpha/beta hydrolase 70 327 IPR029058 -
Vium1829g00002 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 472 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 Pfam Serine carboxypeptidase 80 484 IPR001563 GO:0004185|GO:0006508
Vium1829g00002 496 SUPERFAMILY alpha/beta-Hydrolases 70 490 IPR029058 -
Vium1829g00002 496 FunFam Carboxypeptidase 70 327 - -
Vium1829g00002 496 Gene3D - 390 485 - -
Vium1829g00002 496 Gene3D - 344 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1829g00002 Vium-Chr1829 9907 15268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1829g00002 352 488 Calmodulin-binding Proteins AT2G22960 27.007 2.21e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1829g00002 K16297 - gmx:100783864 798.89