Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1825g00005 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAATGGCTTCCTCTAAACAGCCATCTCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCGAACAGAAGCCGCCGGAGAATACCTCCACGGTATTGTACGTATCCAGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGTCAATTTGGAACCATCAAAAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTTGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTCGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGAATGTTCATTCAAGATTATGGAGAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGACGAGCACAAAAAATTGGTGGAGAGGATTCTAAAACATGACCAAAAACGACGGAAAAGGATAGAGGCTGCTGGCATTGATTACGAAAGCCCTGAGATTATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATNAACAAATGAATGTGTGTTATTTTTCATCGTAG 657 0.417 MGTKAKKAMKKNMKMASSKQPSQGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKRRKRIEAAGIDYESPEIMGNIQPAPKKIKFDXQMNVCYFSS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1825g00005 218 CDD RRM_NIFK_like 50 123 - -
Vium1825g00005 218 Gene3D - 3 124 IPR012677 -
Vium1825g00005 218 Coils Coil 147 167 - -
Vium1825g00005 218 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vium1825g00005 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vium1825g00005 218 MobiDBLite consensus disorder prediction 1 43 - -
Vium1825g00005 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Vium1825g00005 218 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 209 - -
Vium1825g00005 218 SUPERFAMILY RNA-binding domain, RBD 30 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1825g00005 Vium-Chr1825 84605 86786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1825g00005 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 3.45e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1825g00005 K14838 - gmx:100778780 358.221