Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1824g00016 ATGGCGGAGCCTCAGAATCCTTCACCATTCACACATTCTTCAGCTTCTGAAATCGCAGCACAACCACAACCTCTGCCACCTCCCAAGCGGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCCACGAACCGTTTCGTCTGCGAGATCTGTAACAAAGGGTTCCAGCGCGATCAAAACCTGCAGCTTCACCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAGCGGGGGAGCAAGGAACCGCGGAAGAAGGCGTACGTGTGTCCCGAGCCTTCGTGCGTCCACCACAACCCCACCAGGGCGCTGGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCGGACTGGAAAGCCCATACAAAAACTTGTGGCAGCAGAGAGTACCGCTGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTCTGCGATGTATTAGCGCAAGAGAGCGCCAGGACCCAGGTCCAAGACCAGGCCCAGGCCCAGAATGTTAGCACTAGCAACGCTGATTTGGGTTCTTCGCCCCCTGCGCCTCCACTTACTCCCGCTGCGTCTGTGGTGTCTCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAAAGCAACCTGCTTCGGGACAAGCAGCACCCCTTCCAGTTCCAGTTCTTCCACTACTGTATTTGCAAGTGTGTTGGCACCGTCCACAATAACAACTCATTCACATTCTCAATCACCGTCACCTTCAACTTCCTTATTCTTCAACCTCATGTCAAATTTGGCTCGCTCCGATAGCCCTAACGCCATCACCAATATGAGAGAAACCACATCCCTCTCCCTCTCCTCACCACTCTATCTCTCCAACAACGACCCTTCCCACTTCGCAGCATCTCCTCAGCCTGCACTATCTGCCACTGCATTGCTCCAAAAAGCAGCTCAAATGGGTGCTTCCAGTGCTTCCCTTCTCCGTGGCTTAGGCTTAGCAACGACATCACCGTCATCCTTGGGGAAAGACGAGGTTTTTAACATTAGTGCAACCACAACAGCACAATGGAACGGCCAAGTAAATCAAGAGAATCAGCCCGTGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGAGTGATGTGATGATGGGCCCTTCTACCCCATTTGTGGGCCAGCCAATGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCTGCTTTGGTCACGTCTTTCGGAGGGAACTTTGATTCAGCCGGTGATGGAGGAGTTCACCGGTAG 1413 0.5364 MAEPQNPSPFTHSSASEIAAQPQPLPPPKRKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQDQAQAQNVSTSNADLGSSPPAPPLTPAASVVSPTLSIQSSEIPENPRKLSPMSPKATCFGTSSTPSSSSSSTTVFASVLAPSTITTHSHSQSPSPSTSLFFNLMSNLARSDSPNAITNMRETTSLSLSSPLYLSNNDPSHFAASPQPALSATALLQKAAQMGASSASLLRGLGLATTSPSSLGKDEVFNISATTTAQWNGQVNQENQPVVDNLGLGLPCGSDVMMGPSTPFVGQPMTRDLLGLSIGGGASRGGLSALVTSFGGNFDSAGDGGVHR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1824g00016 470 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 250 266 - -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 1 20 - -
Vium1824g00016 470 Gene3D Classic Zinc Finger 92 182 - -
Vium1824g00016 470 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vium1824g00016 470 SMART c2h2final6 134 154 IPR013087 -
Vium1824g00016 470 SMART c2h2final6 99 129 IPR013087 -
Vium1824g00016 470 SMART c2h2final6 58 80 IPR013087 -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 193 266 - -
Vium1824g00016 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 1 41 - -
Vium1824g00016 470 FunFam protein indeterminate-domain 12-like 37 105 - -
Vium1824g00016 470 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Vium1824g00016 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 439 IPR031140 -
Vium1824g00016 470 Pfam Zinc-finger of C2H2 type 58 80 - -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 193 213 - -
Vium1824g00016 470 Gene3D Classic Zinc Finger 54 81 - -
Vium1824g00016 470 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1824g00016 Vium-Chr1824 119660 122819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1824g00016 29 438 IDZ Gene Family AT5G66730 50.766 1.36e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1824g00016 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1824g00016 K25869 - gmx:100800089 686.797