Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1824g00009 ATGACTTCCGACGGAGCAACGTCGGCTGCGGTGGCCAACCGGAGGAAACCATCCTGGAGGGAAAGAGAGAACAACAGGAGGAGAGAGAGGCGAAGAAGAGCCATAGCAGCCAAGATATACACTGGCCTCCGCGCTCAGGGGAACTACAATTTGCCCAAACATTGCGACAACAACGAGGTTTTGAAGGCTCTCTGTGCCGAAGCTGGTTGGACTGTTGAAGAAGATGGTACAACCTATCGCAAGGGATGCAGGGCACCACTTGCAGATGGTGTTGGCACCTCAACCAGAAACACCCCTTTTTCATCGCAAAATCCGAGTCCCCTCTCGTCGTCATTTCCGAGTCCAATTCCTTCCTACCAAGTGAGCCCCTCCTCCTCCTCTTTCCCGAGCCCCTCTCGTTTGGATGACAACAATGCGTCAAATTTGATTCCCTATATTCGACATTCGTTCTCTGCTTCTCTCCCTCCTCTGAGGATATCAAATAGCGCCCCTGTGACCCCGCCTTTGTCCTCGCCAACTTCAAGAAACCCCAAACCAATCCCAACATGGGACTCCATTGTCAAAGCCTCCATGGCATCATCCTTCAACCACCATCACCACCACCATCAAAACCACCCTTTCTTTGCGGCTTCTGCCCCGGCTAGCCCCACACACCGCCACCTTCATGCCCCGCCCACTATTCCCGAATGTGACGAGTCTGATACCTCCACTGTTGAGTCTGGCCAGTGGTTGAACTTCCAAGCATTTGGACCTTCTGTTTCTGCAGTGCCCATCTCTCCCACCTTGAACTTTATCAAACCTGTTCCGAGTCAGCAGCACAAGCACAACCTTAACCACCCTGATAACCGTATCCAGGAGATGAGAAACTCAGAAGTCCAATTTGGAGTGCAGGTGAAGCCCTGGGTTGGGGAGAGGATTCATGAAGGTGGATTGGATGATTTGGAGCTCACACTTGGAAGCGGGAAGACGCTTGCTTAG 978 0.5245 MTSDGATSAAVANRRKPSWRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGCRAPLADGVGTSTRNTPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRLDDNNASNLIPYIRHSFSASLPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIVKASMASSFNHHHHHHQNHPFFAASAPASPTHRHLHAPPTIPECDESDTSTVESGQWLNFQAFGPSVSAVPISPTLNFIKPVPSQQHKHNLNHPDNRIQEMRNSEVQFGVQVKPWVGERIHEGGLDDLELTLGSGKTLA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1824g00009 325 MobiDBLite consensus disorder prediction 1 31 - -
Vium1824g00009 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 141 IPR008540 -
Vium1824g00009 325 MobiDBLite consensus disorder prediction 91 135 - -
Vium1824g00009 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 5 323 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vium1824g00009 325 MobiDBLite consensus disorder prediction 15 30 - -
Vium1824g00009 325 MobiDBLite consensus disorder prediction 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1824g00009 Vium-Chr1824 78348 80724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1824g00009 1 322 BZR Transcription Factor Family AT1G75080 64.118 1.49e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium1824g00009 BES1_N 4.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1824g00009 K14503 - gmx:100803869 488.804