Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1823g00004 ATGATAAGCATGGGAGAAGGAAGTGACCATCAAGCTATGGCGGATGATGGGAATGTTGAACATATTGGAGGTGGAGTTAATAAGGCTGAAAACAACTCTGGCTCTCATGTCGAGGTTGGGGTTTCTGAGCCATATGTGGGTAGGGAGTTTGATTCTGAAGATGCTGCAAAGACTTTCTACAATGAGTATGCCAGACGTGTGGGTTTCAGCTGCAAAGCTGGTGCAAAGGGTCGTTCCAAAGCCAATGGGGAGAATATGTACTGCGAATTTGTCTGTGGCAGGGAGGATTTGAAAAGAAAGCTTGCTGGCAGTTGCAATGCAATGATTAGGATCGAGAAGAAGGGCCAAAATAATTGGGTTGTTACACAATTTGTAAAGGAGCATAGCCATTCCATGGCAAACCTTAGTAAGGTGCAGAGTATTAGGCCTCGCAAGCACTTTTCTAGTGTGGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGCGGTGTGATGTATGTATCTATGGATAAGAATGGCATTCCTACTAAGAATATTCACGGGATTAGGAATATTCCTGCTGTTGCTACTATTGCTGAAACAGTTCACCCAGTTAAAAGTCCGTCAATGATGAATTATGCTGTTAGACCACCTATTCAAAGGAGGACATTAGGGAGGGATGCTCACAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGATGATAATCACATGTCTAATGTGTTTTGGGCAGATGCGAGATCAAGGACTGCTTATGGTCATTTTGGTGATACGGTTACTATGGACACAACTTACAGAATAAATCAATATAGAGTGCCCTTTGCTCTGTTCACCGGGGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTCTTGGATGATTCTGAGGCTTCTTTTATCTGGCTCTTCAAGACATTTTTGACAGCAATGAATGACCGTTACCCTGTCTCTATCACTACTGATCAAGATAGAGCTATACAAATAGCAATTTCACAAGTTTTTCCTCAAACACGGCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCATGAGAAGTTGGCCTATGTATGCAACATGCATCCAAATTTTCAGATTGAACTATATAATTGTATTAATCTGACAGAAACAGTTGAGGAGTTTGATTCATCGTGGAATTTTATCATGAATAAATATGATCTCACAAAAAATGATTGGCTTCAGTCATTGTACAATGCTCGTGCACAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCAGTAATATCTCCTAATCACGGAATCGATGGTTCTTTTTTTTATGGTTTTGCCAACCATCAGGCGACATTGCCAGTGTTCTTTAGGCAGTACGAACAAGCTTTAGAGAGCTGGTTTGAAAAAGAATTAGAAACAGATTATGAGACAATTTGCACCACCCCTGTCCCGAGGACACCTTCCCCAATGGAGAAGCAGGCTGCTAATCTCTATACTCGGAGAATATTTTCAAAGTTTCAAGAAGAGCTAGTGGAAACCTTTGCTTATACAGCCAACAGAATTGAAGAAGATGGAGAAAGTAGCATATTCAGGGTTGCAAAATTTGACGATGACCAAAAGGCTTATGTTGTCACATTAAACCTTTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTGCCATCTCATTATATTTTAAAACGGTGGACAAGAAATGCAAAAGTCAGTGCTGGGTCAGTTGAACATGCTGGTGAATTGCATGTACATGAGTCTTTGGCATCACGATATAGCAATCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCAATGACTGTGGAAACACATGATACTGCAATTGGTGCTCTTCGAGAAAGTGCAAAAAAGATTTCTTTCATGAAGAGAAGTGTTGCCAAAGTTTCCCCACCCAGTCATCCCGTCAGTGGGGCTGCTTATGATGACAGAAAATCCCCTACTTCAACAGCAGATACAAACCCTCTTCTGTGGCCACAGCAGGATGAAATAACGAAGAGGTTTAATCTTAATGATGCTAGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGAATGACCCCAGTGTCTCTTCAGCGAGATGATGGTACACCTGAAAACATGGTGGTTTATCCCTGTCTGAAATCATTGACATGGGTAATGGAGAACAAGACCTCAACACCAGGGAATAGAGTGGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGAATCCATCAACAGAATCGGAAGTTAAGTTTAATCTCTCAAAAGTTACTTTGGAACCGTTGTTTAACCATATGGTCAACATCAGAGATCAACTTTCTGCACCAACTAGGAAGTTTGCTGTATTAAATTTAAAGCTTCCAGTTGCCGATACAAATACTGGTGTGTGTGAAGTCAAGTTTCAGGTGTCCAGGGAAACATTAGTTGCTGTACTACGATCAATGGACTATATACGTGAGCAACTATCGGTTCCTGGCGATGCACAAACAGAAGCTGCTATATTGAAAAGACCTCGGAAGTGA 2649 0.4111 MISMGEGSDHQAMADDGNVEHIGGGVNKAENNSGSHVEVGVSEPYVGREFDSEDAAKTFYNEYARRVGFSCKAGAKGRSKANGENMYCEFVCGREDLKRKLAGSCNAMIRIEKKGQNNWVVTQFVKEHSHSMANLSKVQSIRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNGIPTKNIHGIRNIPAVATIAETVHPVKSPSMMNYAVRPPIQRRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDDDNHMSNVFWADARSRTAYGHFGDTVTMDTTYRINQYRVPFALFTGVNHHGQMILFGCALLLDDSEASFIWLFKTFLTAMNDRYPVSITTDQDRAIQIAISQVFPQTRHCISKWHVLREGHEKLAYVCNMHPNFQIELYNCINLTETVEEFDSSWNFIMNKYDLTKNDWLQSLYNARAQWVPAYFRDSFFAVISPNHGIDGSFFYGFANHQATLPVFFRQYEQALESWFEKELETDYETICTTPVPRTPSPMEKQAANLYTRRIFSKFQEELVETFAYTANRIEEDGESSIFRVAKFDDDQKAYVVTLNLSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKVSAGSVEHAGELHVHESLASRYSNLCWEAIKYAEEGAMTVETHDTAIGALRESAKKISFMKRSVAKVSPPSHPVSGAAYDDRKSPTSTADTNPLLWPQQDEITKRFNLNDASTPVQSVADLNLPRMTPVSLQRDDGTPENMVVYPCLKSLTWVMENKTSTPGNRVAVINLKLQDYSRNPSTESEVKFNLSKVTLEPLFNHMVNIRDQLSAPTRKFAVLNLKLPVADTNTGVCEVKFQVSRETLVAVLRSMDYIREQLSVPGDAQTEAAILKRPRK 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1823g00004 882 Pfam FAR1 DNA-binding domain 58 132 IPR004330 -
Vium1823g00004 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 665 IPR031052 GO:0006355
Vium1823g00004 882 SMART 26again6 564 591 IPR006564 GO:0008270
Vium1823g00004 882 MobiDBLite consensus disorder prediction 675 701 - -
Vium1823g00004 882 Pfam SWIM zinc finger 553 587 IPR007527 GO:0008270
Vium1823g00004 882 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Vium1823g00004 882 Pfam MULE transposase domain 275 366 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1823g00004 Vium-Chr1823 17026 22563 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium1823g00004 MULE 8.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1823g00004 - - gmx:100807296 1538.09