Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1822g00016 ATGCCTCGGGGAAAAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAACAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTAGAAGAGATAGAAGAGGAGGTAGAAGAAGAGGAGGAGGACCCAGAGGAGGTAGAGGTAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGAGGATGCCATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGACGAGGACGAGAAGAAAAAACATGCCGAACTCCTTGCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATTCCAGCGAGAACAAGGGATTCGGTTTTGTGACATTTAGAAGTGTGGAGTTGGCTTCTAAAGCTATTGAAGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTATGGAAGATCTGAGGAAGATTGTATCTGAGATTGGACCTGGAGTTACCGGTGTGGAACTAGTCAAGGATATGAAGAACACCAATAACAATCGTGGCTTTGCTTTTATTGACTATTATAATAATGCTTGTGCTGAGTATTCTAAGCTAAAGATGATGAGCCCAACATTTAAGCTAGGGGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAAGCAGTATATGTGAAGAACCTGCCGAAGAATGTGACTCAAGAACAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTTTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGGGTCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACAACATGTCGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCGGGATATCCTGCTCCAGGTCTTACACAGCCCTTGCTTTATGGAGGAGGTCAAGCTCCCGCCGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAACCACAAGCTCCATCCTCACATCATAGAGGTGGTCGGAGCGGTGGCAGTGGGGGTGGCAATAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAATAATGATGGTGGTCAAGGGCGCAGATATCGCCCATATTAG 1527 0.4466 MPRGKANSSSAAKPSDSEKPVESDEKVDFEEENDPEETMEEEIEYEEVEEEVEVEEIEEEVEEEEEDPEEVEVEEEEEEEEEEEEEEEIEEVDEEDAMQNHSSDEAKVEDEDEKKKHAELLALPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHSSENKGFGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGMEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQVLECSLAKPQSDQKSGGSNTQKPGPGLLPSYPQHVGYGLVGGAYGALGAGYPAPGLTQPLLYGGGQAPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1822g00016 508 MobiDBLite consensus disorder prediction 99 114 - -
Vium1822g00016 508 MobiDBLite consensus disorder prediction 379 400 - -
Vium1822g00016 508 Coils Coil 38 98 - -
Vium1822g00016 508 Gene3D - 289 409 IPR012677 -
Vium1822g00016 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Vium1822g00016 508 MobiDBLite consensus disorder prediction 27 98 - -
Vium1822g00016 508 MobiDBLite consensus disorder prediction 460 508 - -
Vium1822g00016 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 373 IPR000504 GO:0003723
Vium1822g00016 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 269 IPR000504 GO:0003723
Vium1822g00016 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 200 IPR000504 GO:0003723
Vium1822g00016 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 290 IPR000504 GO:0003723
Vium1822g00016 508 MobiDBLite consensus disorder prediction 379 397 - -
Vium1822g00016 508 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 209 289 - -
Vium1822g00016 508 Gene3D - 71 208 IPR012677 -
Vium1822g00016 508 MobiDBLite consensus disorder prediction 482 496 - -
Vium1822g00016 508 SUPERFAMILY RNA-binding domain, RBD 125 293 IPR035979 GO:0003676
Vium1822g00016 508 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 500 - -
Vium1822g00016 508 FunFam RNA recognition motif-containing protein 21 208 - -
Vium1822g00016 508 SUPERFAMILY RNA-binding domain, RBD 296 397 IPR035979 GO:0003676
Vium1822g00016 508 SMART rrm2_1 303 376 IPR003954 GO:0003676
Vium1822g00016 508 SMART rrm2_1 129 202 IPR003954 GO:0003676
Vium1822g00016 508 CDD RRM_SF 130 202 - -
Vium1822g00016 508 SMART rrm1_1 209 286 IPR000504 GO:0003723
Vium1822g00016 508 SMART rrm1_1 129 202 IPR000504 GO:0003723
Vium1822g00016 508 SMART rrm1_1 303 376 IPR000504 GO:0003723
Vium1822g00016 508 MobiDBLite consensus disorder prediction 1 114 - -
Vium1822g00016 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Vium1822g00016 508 Gene3D - 209 288 IPR012677 -
Vium1822g00016 508 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 291 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1822g00016 Vium-Chr1822 155240 160591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1822g00016 130 465 Eukaryotic Initiation Factors Gene Family AT4G34110 25.067 1.18e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1822g00016 K13161 - gmx:100806658 689.493