Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1822g00016 | ATGCCTCGGGGAAAAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAACAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTAGAAGAGATAGAAGAGGAGGTAGAAGAAGAGGAGGAGGACCCAGAGGAGGTAGAGGTAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGAGGATGCCATGCAAAACCATAGCAGTGATGAAGCAAAGGTGGAAGACGAGGACGAGAAGAAAAAACATGCCGAACTCCTTGCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGCGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATTCCAGCGAGAACAAGGGATTCGGTTTTGTGACATTTAGAAGTGTGGAGTTGGCTTCTAAAGCTATTGAAGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTATGGAAGATCTGAGGAAGATTGTATCTGAGATTGGACCTGGAGTTACCGGTGTGGAACTAGTCAAGGATATGAAGAACACCAATAACAATCGTGGCTTTGCTTTTATTGACTATTATAATAATGCTTGTGCTGAGTATTCTAAGCTAAAGATGATGAGCCCAACATTTAAGCTAGGGGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAAGCAGTATATGTGAAGAACCTGCCGAAGAATGTGACTCAAGAACAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTTTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGGGTCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACAACATGTCGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCGGGATATCCTGCTCCAGGTCTTACACAGCCCTTGCTTTATGGAGGAGGTCAAGCTCCCGCCGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAACCACAAGCTCCATCCTCACATCATAGAGGTGGTCGGAGCGGTGGCAGTGGGGGTGGCAATAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAATAATGATGGTGGTCAAGGGCGCAGATATCGCCCATATTAG | 1527 | 0.4466 | MPRGKANSSSAAKPSDSEKPVESDEKVDFEEENDPEETMEEEIEYEEVEEEVEVEEIEEEVEEEEEDPEEVEVEEEEEEEEEEEEEEEIEEVDEEDAMQNHSSDEAKVEDEDEKKKHAELLALPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHSSENKGFGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGMEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQVLECSLAKPQSDQKSGGSNTQKPGPGLLPSYPQHVGYGLVGGAYGALGAGYPAPGLTQPLLYGGGQAPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY | 508 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 99 | 114 | - | - | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 379 | 400 | - | - | |
Vium1822g00016 | 508 | Coils | Coil | 38 | 98 | - | - | |
Vium1822g00016 | 508 | Gene3D | - | 289 | 409 | IPR012677 | - | |
Vium1822g00016 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 302 | 380 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 27 | 98 | - | - | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 460 | 508 | - | - | |
Vium1822g00016 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 304 | 373 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 269 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 200 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 290 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 379 | 397 | - | - | |
Vium1822g00016 | 508 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 209 | 289 | - | - | |
Vium1822g00016 | 508 | Gene3D | - | 71 | 208 | IPR012677 | - | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 482 | 496 | - | - | |
Vium1822g00016 | 508 | SUPERFAMILY | RNA-binding domain, RBD | 125 | 293 | IPR035979 | GO:0003676 | |
Vium1822g00016 | 508 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 8 | 500 | - | - | |
Vium1822g00016 | 508 | FunFam | RNA recognition motif-containing protein | 21 | 208 | - | - | |
Vium1822g00016 | 508 | SUPERFAMILY | RNA-binding domain, RBD | 296 | 397 | IPR035979 | GO:0003676 | |
Vium1822g00016 | 508 | SMART | rrm2_1 | 303 | 376 | IPR003954 | GO:0003676 | |
Vium1822g00016 | 508 | SMART | rrm2_1 | 129 | 202 | IPR003954 | GO:0003676 | |
Vium1822g00016 | 508 | CDD | RRM_SF | 130 | 202 | - | - | |
Vium1822g00016 | 508 | SMART | rrm1_1 | 209 | 286 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | SMART | rrm1_1 | 129 | 202 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | SMART | rrm1_1 | 303 | 376 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
Vium1822g00016 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | IPR000504 | GO:0003723 | |
Vium1822g00016 | 508 | Gene3D | - | 209 | 288 | IPR012677 | - | |
Vium1822g00016 | 508 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 291 | 400 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1822g00016 | Vium-Chr1822 | 155240 | 160591 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1822g00016 | 130 | 465 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.067 | 1.18e-10 | 62.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1822g00016 | K13161 | - | gmx:100806658 | 689.493 |