Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1822g00014 ATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAGGAAGGAGAAATTTCTGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTGTCAGTGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGTTGAAAAGAAAGCGGCAGTGTCAAGAGGAAAAGAAGATGAGCAGAGAAAGAAAAGGAAATTGGAAACTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGATGAGACACCTGATAGAGCGGAGGGTTCTGATAAAGGTGAGGGCGAGGAGGACGATGAATAA 459 0.4662 MAEAEELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLEEFRKKNVEKKAAVSRGKEDEQRKKRKLETESSDKGEASINDETPDRAEGSDKGEGEEDDE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1822g00014 152 MobiDBLite consensus disorder prediction 101 143 - -
Vium1822g00014 152 SUPERFAMILY Histone-fold 7 122 IPR009072 GO:0046982
Vium1822g00014 152 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 146 - -
Vium1822g00014 152 MobiDBLite consensus disorder prediction 101 152 - -
Vium1822g00014 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Vium1822g00014 152 Gene3D Histone, subunit A 1 151 IPR009072 GO:0046982
Vium1822g00014 152 FunFam DNA polymerase epsilon subunit 3 1 143 - -
Vium1822g00014 152 Coils Coil 58 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1822g00014 7 107 CCAAT-HAP3 Transcription Factor Family AT4G14540 28.713 2.18e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium1822g00014 CBFD_NFYB_HMF 1.4e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1822g00014 K02326 - gmx:100306382 225.713