Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1822g00011 ATGCCAATCCCTTCTGAGAGACACATGTTCCTTCACACTGGAAATGGATCTGGTGATTCTAGTCTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCAGACAAGGCAACACCCAAAACGGTAATGAAACTCATGGAGATTTCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGTGACACACAAAATCTCCATAAACCCGGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCCCCTCAGTCGAATAACAAAGATTTACACATCAGTGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAACGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGATCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAACTCAGCATTTTTAGAGCTGAAGGAGTTACAAGGATTTAGCCCTCACCAAACACAAACCAACCAGCCAAACGACTGTTCTATGGACAGTTGCCTCACATCCTGTGAGGTGTCACAGAAAGAGCAAGAGATACAAAACGGAGGGATGAGCCTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGCTCATAGAGGGTCCTAATCTCAACAACCTACCAAGCACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTCACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGAAAGAATCAGTTAAATCAGTGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCATACTTTGCTGCACCAAACCTGGACCTAACCACTGAAGACAAGAACAATAGGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1131 0.4385 MPIPSERHMFLHTGNGSGDSSLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMEISGLTLYHLKSHLQKYRLSKSLHGQSNNVTHKISINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSPHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKELIEGPNLNNLPSTDLKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGETENGSTIRKESVKSVAEKVSQDYGLPSYFAAPNLDLTTEDKNNRSCKELDLNGFSWN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1822g00011 376 FunFam Myb family transcription factor 28 86 - -
Vium1822g00011 376 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Vium1822g00011 376 Coils Coil 135 155 - -
Vium1822g00011 376 Pfam MYB-CC type transfactor, LHEQLE motif 133 179 IPR025756 -
Vium1822g00011 376 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Vium1822g00011 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Vium1822g00011 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 260 IPR044848 GO:0003700
Vium1822g00011 376 NCBIfam myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Vium1822g00011 376 Gene3D - 28 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1822g00011 Vium-Chr1822 127890 130453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1822g00011 61 376 G2-like Transcription Factor Family AT3G04030 49.697 2.62e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1822g00011 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1822g00011 - - gmx:100805237 632.869