Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1822g00006 ATGGCGGGCCAAAGATTAGGAGAAACGGGTCTGTCTGAGTCAGGACCTTCAAGTCATCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCTCAGCATCAGGCCTAATGAATCAAGGGTCTGGTTTTGATTTTGGAGAGCTGGAAGAGGCTTTTGCTCCATTGCAAGGCATCAAGATAAGAAGTGATGAAGCCAAATCATCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCACCAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCCATAAGCATAAAAGCATCTTCTTCAGATCATCAACAGGCTTTTGATCAGCTTCATCAACAACAACAACAGGAGACAGCAACTGATGGCTCAAGGGCAGGGACATCACAGACTCAATCAGCAGCCAAATCACAACAAGAAAAGAGGAAAGGAGCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGAGTGTTTATGGGTTGTGGTGGTGCTGGTGGAAGTATATTAAGTTCTGGAGCTGCAATGTTTGACCTGGAGTATGCAAGATGGTTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACCGGGCTGCAGGCACCACTGTCCGACGGCGAGCTGAGGGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAGGGAGTGGCTGCTAAAACAGATGTGTTTCATCTCATCAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTCAAACCATCAGAACTCATCACAATGTTGATACAACAGTTGGAGCCCCTAGCTGAGCAGCAAATTATGGGCATATATGCTCTCCGTCATTCTTCAGTGCAAGCAGAAGACGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTCGTTGACACCATCGCCGGTGGCTCCGTCACCGATGGCGTGCAACAGATGGTGGCCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTGTTGGCCAGGCTGATAATCTGAGACAACAAACCCTTCATCAGTTATGTCGATTACTGACAGTTCGACAAGCTGCAAGATGTTTTGTTGTGATTGGAGAGTATTATGGTCGTTTAAGAGCCCTAAGTTCTCTTTGGGCATCAAGACCTAGAGAGAGCATGATCAGTGATGATAACTCATGCCAAACAACCACAGAACTGCAGATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1473 0.4691 MAGQRLGETGLSESGPSSHHVPYGVLHGINTSASGLMNQGSGFDFGELEEAFAPLQGIKIRSDEAKSSLFTGRPSATLEMFPSWPMRFHQTPRGGSKSGGESTDSGSGVNTLSSKNELQFETESPISIKASSSDHQQAFDQLHQQQQQETATDGSRAGTSQTQSAAKSQQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSILSSGAAMFDLEYARWLEDDHRHMAELRTGLQAPLSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLEPLAEQQIMGIYALRHSSVQAEDALTQGLEQLQQSLVDTIAGGSVTDGVQQMVAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFVVIGEYYGRLRALSSLWASRPRESMISDDNSCQTTTELQMVQPSQNHFSNF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1822g00006 490 MobiDBLite consensus disorder prediction 81 112 - -
Vium1822g00006 490 ProSiteProfiles DOG1 domain profile. 251 459 IPR025422 GO:0006351|GO:0043565
Vium1822g00006 490 SMART brlzneu 183 260 IPR004827 GO:0003700|GO:0006355
Vium1822g00006 490 SUPERFAMILY Leucine zipper domain 187 229 IPR046347 GO:0003700|GO:0006355
Vium1822g00006 490 CDD bZIP_HBP1b-like 187 238 - -
Vium1822g00006 490 Pfam Seed dormancy control 268 343 IPR025422 GO:0006351|GO:0043565
Vium1822g00006 490 MobiDBLite consensus disorder prediction 131 173 - -
Vium1822g00006 490 MobiDBLite consensus disorder prediction 95 112 - -
Vium1822g00006 490 FunFam BZIP family transcription factor 186 235 - -
Vium1822g00006 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Vium1822g00006 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Vium1822g00006 490 PANTHER TRANSCRIPTION FACTOR TGA9 125 462 - -
Vium1822g00006 490 MobiDBLite consensus disorder prediction 174 189 - -
Vium1822g00006 490 Gene3D - 186 234 - -
Vium1822g00006 490 Pfam bZIP transcription factor 186 228 IPR004827 GO:0003700|GO:0006355
Vium1822g00006 490 MobiDBLite consensus disorder prediction 131 189 - -
Vium1822g00006 490 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1822g00006 Vium-Chr1822 57431 64360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1822g00006 132 490 bZIP Transcription Factor Family AT1G08320 67.967 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1822g00006 DOG1 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1822g00006 K14431 - gmx:100101904 806.208