LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1822g00005	ATGGCGGGCCAAAGATTAGGAGAAACGGGTCTGTCTGAGTCAGGACCTTCAAGTCATCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCTCAGCATCAGGCCTAATGAATCAAGGGTCTGGTTTTGATTTTGGAGAGCTGGAAGAGGCTTTTGCTCCATTGCAAGGCATCAAGATAAGAAGTGATGAAGCCAAATCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCACCAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAAATGAGCTCCAATTTGAAACAGAATCTCCCATAAGCATAAAAGCATCTTCTTCAGATCATCAACAGGCTTTTGATCAGCTTCATCAACAACAACAACAGGAGACAGCAACTGATGGCTCAAGGGCAGGGACATCACAGACTCAATCAGCAGCCAAATCACAACAAGAAAAGAGGAAAGGAGCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTCACACACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGAGTGTTTATGGGTTGTGGTGGTGCTGGTGGAAGTATATTAAGTTCTGGAGCTGCAATGTTTGACCTGGAGTATGCAAGATGGTTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACCGGGCTGCAGGCACCACTGTCCGACGGCGAGCTGAGGGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAGGGAGTGGCTGCTAAAACAGATGTGTTTCATCTCATCAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTCAAACCATCAGAACTCATCACAATGTTGATACAACAGTTGGAGCCCCTAGCTGAGCAGCAAATTATGGGCATATATGCTCTCCGTCATTCTTCAGTGCAAGCAGAAGACGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTCGTTGACACCATCGCCGGTGGCTCCGTCACCGATGGCGTGCAACAGATGGTGGCCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTGTTGGCCAGGCTGATAATCTGAGACAACAAACCCTTCATCAGTTATGTCGATTACTGACAGTTCGACAAGCTGCAAGATGTTTTGTTGTGATTGGAGAGTATTATGGTCGTTTAAGAGCCCTAAGTTCTCTTTGGGCATCAAGACCTAGAGAGAGCATGATCAGTGATGATAACTCATGCCAAACAACCACAGAACTGCAGATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA	1476	0.4695	MAGQRLGETGLSESGPSSHHVPYGVLHGINTSASGLMNQGSGFDFGELEEAFAPLQGIKIRSDEAKSSALFTGRPSATLEMFPSWPMRFHQTPRGGSKSGGESTDSGSGVNTLSSKNELQFETESPISIKASSSDHQQAFDQLHQQQQQETATDGSRAGTSQTQSAAKSQQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSILSSGAAMFDLEYARWLEDDHRHMAELRTGLQAPLSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLEPLAEQQIMGIYALRHSSVQAEDALTQGLEQLQQSLVDTIAGGSVTDGVQQMVAAMGKLANLEGFVGQADNLRQQTLHQLCRLLTVRQAARCFVVIGEYYGRLRALSSLWASRPRESMISDDNSCQTTTELQMVQPSQNHFSNF	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1822g00005	491	SMART	brlzneu	184	261	IPR004827	GO:0003700\|GO:0006355
	Vium1822g00005	491	FunFam	BZIP family transcription factor	187	236	-	-
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	132	174	-	-
	Vium1822g00005	491	Coils	Coil	214	234	-	-
	Vium1822g00005	491	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	186	230	IPR004827	GO:0003700\|GO:0006355
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	82	113	-	-
	Vium1822g00005	491	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	191	206	IPR004827	GO:0003700\|GO:0006355
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	175	190	-	-
	Vium1822g00005	491	CDD	bZIP_HBP1b-like	188	239	-	-
	Vium1822g00005	491	ProSiteProfiles	DOG1 domain profile.	252	460	IPR025422	GO:0006351\|GO:0043565
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	96	113	-	-
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	132	190	-	-
	Vium1822g00005	491	Pfam	bZIP transcription factor	187	229	IPR004827	GO:0003700\|GO:0006355
	Vium1822g00005	491	Pfam	Seed dormancy control	269	344	IPR025422	GO:0006351\|GO:0043565
	Vium1822g00005	491	SUPERFAMILY	Leucine zipper domain	188	230	IPR046347	GO:0003700\|GO:0006355
	Vium1822g00005	491	Gene3D	-	187	235	-	-
	Vium1822g00005	491	PANTHER	TRANSCRIPTION FACTOR TGA9	126	463	-	-
	Vium1822g00005	491	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1822g00005	Vium-Chr1822	57431	64594	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1822g00005	133	491	bZIP Transcription Factor Family	AT1G08320	67.967	0.0	510

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vium1822g00005		DOG1	3.6e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1822g00005	K14431		-	gmx:100101904	801.586