Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1821g00001 ATGATGAGTAGCCCCGCCATTCGACGCATTTCAGAATGCTTTGTGAAGCCTCGATCCTCCAACCAAATCTGCAATTTAACTCCTTGGGATATTGCTATGTTGTATACAAACTATATCAAGGAGTGTCTTCTCTTCAAGAAACCTGCGACCCTTATTGATGAACATCATTTCAAACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTACCCTCTCCCATTTTTATCCTTTGTCCGGTCGCCTAGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTATTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGAATATGACTATAGCTGATATCCTCTCCCCCTTTGACGTCCCACCCATTTTTCAATCGTTCTTTGACCACCCCAAAGCACTCAACCATGACCATCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTATCATAGGTTGTTCCATGAATCACGCTGTTGCTGATGGCACTTCGTATTGGAATTTCTTCAATACGTGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTTCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCAAATAATTGTAGACCACCGATCTCTCTTCCTTACAAACAGCATGACGAGTTTATAGAGAGATCTGAAAGACCCCTCCTGAGGTGTAGATATTTCCACTTTTCAGCAGAGTCTATTTCGAAACTGAAAGCAAAGGCCAACTCAGAATCCAATACCACAGTAATCTCTTCCCTCCAGTCATTATCAGCACTCGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCTTCTGACCAGAAAACAACTTTCAGATTAGCCGCAGATTGTCGATCAAGAATGAAGCCGCCTTTGGCAGAAGAATACTTTGGAAACTGCCTTCATGTAGCGAGTGCAGAAGCGACAACAAAGGAATTACTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGCTGTTACAGACCTTAACGATAGAGTGGTGCTAGAATTTCTGGAAGGGTGGTTAGATTCTCCTTTCATAATTCAAATGGGTCGTTACTTTGACCCGTACAGCTCGTTGATGGTTGGTTCGCCCAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGTTCTGCAAACAAACTTGATGGGAAGGTGTCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCACACACAATGAGTGCTTTGGAATCAGACGAAGAGTTCATGAATGCAGTTACTGAGTTTGATTCCCTGTTGTTCTAG 1380 0.442 MMSSPAIRRISECFVKPRSSNQICNLTPWDIAMLYTNYIKECLLFKKPATLIDEHHFKQNLLEKLKHSLSLTLSHFYPLSGRLVTHKTQNPPSYTVSIDCNNSDGARFIHATLNMTIADILSPFDVPPIFQSFFDHPKALNHDHHTMPLLSIQVTELVDGVIIGCSMNHAVADGTSYWNFFNTWSQIFQAQSQSENHEYDVPISRQPIHNRWFPNNCRPPISLPYKQHDEFIERSERPLLRCRYFHFSAESISKLKAKANSESNTTVISSLQSLSALVWRSITRARSPPSDQKTTFRLAADCRSRMKPPLAEEYFGNCLHVASAEATTKELLENGIGWAAWKLHVAVTDLNDRVVLEFLEGWLDSPFIIQMGRYFDPYSSLMVGSPRFNMYGCEFGMGKAVAARSGSANKLDGKVSSYPGREGGGSIDLEVCLSPHTMSALESDEEFMNAVTEFDSLLF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1821g00001 459 Gene3D - 9 223 IPR023213 -
Vium1821g00001 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 449 - -
Vium1821g00001 459 Gene3D - 225 443 IPR023213 -
Vium1821g00001 459 Pfam Transferase family 18 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1821g00001 Vium-Chr1821 3790 5257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1821g00001 13 442 Monolignol Biosynthesis Gene Families AT5G48930 26.327 2.56e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1821g00001 - - vra:106761257 811.216