Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1820g00004 ATGATGAATGAAGATAGCAGCAATTCTTGGTTAAGGAGGACCAAATTCTCCCACACAGTTTGTCACCGGTTGGATTATTCCAGTTCCAGTTTAGGGTCTTTCAGCATTCAGCCAAGGACACAGCACAGTTCGAGTCTGAAATCAAGGCCAGATGTAACTTTTGTTTCCGAAACCTCCTCGCAGGTTCGGAAAAAGCCCATAATGAGCAAGCAGAGATCTTTGTCCCCTTTGCCTGAAACCTCTCTGTCTGAAACCTTCAAGGAAGCTAGATATGAGCGGAAGAGGTTCTCCACACCTGGTCCAAGGAGGAAAGAGCATGATAAGAAAATCATGGGGAAGTTACTGAACAAGGATTCTCGTGTGTCCAGTTCTAGATCTCCTTACAGCAGCCCAATGACTAAATCCCCTTACAACAGTCCAATGACCAAATCCCCATACAGCAGTCCAATTAGACACCTTGCTTCAATCAAATTGAGCGACAAGTCCAAGCAGCGCAAGGATTCAGGATGGACGAAGTATTTTGACCATGGAGGAGGAAAGGTAACTGCTGTGGAAACAGCTGAGGAATGGAATGTTGATCTCTCTATGCTCTTTGTTGGTGTTAGGTTTGCTCATGGGGCTCACAGCAGGCTTTACCATGGCATGTATAAAGATGAAGCTGTGGCTGTAAAAATTATCAGGGTACCAGATGATGACGAAAATGGAATATTAGCTGATCGATTAGAGAAACAATTCATTAGAGAAGTAACACTTTTATCTCGTCTCCACCATCGAAATGTTATCAAGTTCGTAGCAGCATGCAGAAAGCCACCTGTCTACTGCGTTATCACAGAATATCTATCAGAAGGATCCTTGAGGTCATATTTGCATAAGTTGGAGACAAAAACTATTCCTCTAGAGAAGCTAATTACTTTTGCTCTGGATATTGCTCGTGGGATGGAATATATACACTCTCAAGGTGTCATTCACCGAGATCTTAAACCAGAGAATGTCCTTATTAATGAAGACTTTCACCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCTTACTGTGACTTATTTGCTGATGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCCTATGGGAGAAAGGTTGATGTATATAGTTTCGGGCTTATCTTATGGGAGATGGTTACTGGAACTATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTTGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGTCCAGCTGCAATGCGAGCTTTAATCGAGCAATGTTGGTCTTTGAATCCGGACAAGCGGCCTGAGTTCTGGCAGGTTGTTAAGGTATTAGAACAATTTGAATCTTCGCTTGCCCGTGATGGAACCCTGACTCTGGTGCAAAACCCTTGTTGCCAAGATCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGTCCTGTGCATCAACACAATGGTCCTGTGCCTAAACCCAAATTTACCTGA 1515 0.4337 MMNEDSSNSWLRRTKFSHTVCHRLDYSSSSLGSFSIQPRTQHSSSLKSRPDVTFVSETSSQVRKKPIMSKQRSLSPLPETSLSETFKEARYERKRFSTPGPRRKEHDKKIMGKLLNKDSRVSSSRSPYSSPMTKSPYNSPMTKSPYSSPIRHLASIKLSDKSKQRKDSGWTKYFDHGGGKVTAVETAEEWNVDLSMLFVGVRFAHGAHSRLYHGMYKDEAVAVKIIRVPDDDENGILADRLEKQFIREVTLLSRLHHRNVIKFVAACRKPPVYCVITEYLSEGSLRSYLHKLETKTIPLEKLITFALDIARGMEYIHSQGVIHRDLKPENVLINEDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPSDCPAAMRALIEQCWSLNPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNPCCQDHKKGLLHWIQKLGPVHQHNGPVPKPKFT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1820g00004 504 ProSiteProfiles Protein kinase domain profile. 197 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1820g00004 504 SMART serkin_6 197 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1820g00004 504 MobiDBLite consensus disorder prediction 117 148 - -
Vium1820g00004 504 FunFam serine/threonine-protein kinase HT1 282 475 - -
Vium1820g00004 504 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 79 460 - -
Vium1820g00004 504 Gene3D Transferase(Phosphotransferase) domain 1 282 479 - -
Vium1820g00004 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Vium1820g00004 504 Pfam Protein tyrosine and serine/threonine kinase 204 453 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 SUPERFAMILY Protein kinase-like (PK-like) 186 453 IPR011009 -
Vium1820g00004 504 PRINTS Tyrosine kinase catalytic domain signature 424 446 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 PRINTS Tyrosine kinase catalytic domain signature 361 371 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 PRINTS Tyrosine kinase catalytic domain signature 277 290 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 PRINTS Tyrosine kinase catalytic domain signature 315 333 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Vium1820g00004 504 FunFam Serine/threonine-protein kinase isoform 1 187 281 - -
Vium1820g00004 504 MobiDBLite consensus disorder prediction 31 81 - -
Vium1820g00004 504 Gene3D Phosphorylase Kinase; domain 1 185 281 - -
Vium1820g00004 504 CDD STKc_MAP3K-like 204 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1820g00004 Vium-Chr1820 79324 83794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1820g00004 2 504 MAP Kinase Kinase Kinase AT5G58950 57.169 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium1820g00004 PK_Tyr_Ser-Thr 9.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1820g00004 - - gmx:100784454 886.715