Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1820g00003 ATGGAGAACAACCCTAGTTCATCAACAAGTGATAGAAAATTGGTTGAGAGGAATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGGAAGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAATTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAAAGCAACTTAACTGACATTGTAAGGTCAAGAACTGCTAGCATGAATATGGAACTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTTTCATTTCATTTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGTTGAAAATGCAGTTCTCCATAAAATACACTGTCAGGTAGAAGAATCTGTGAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGCATGA 522 0.3755 MENNPSSSTSDRKLVERNRRNQMKDLFSKLNSVLPHQSSREGISRPDQIGEAIDYIKNLQIKLEKMKEKKSNLTDIVRSRTASMNMELKSPQFKIQQMGSVLEVVLVTGLDFHFIFNETIRVLQEEGSDIVNASYTVVENAVLHKIHCQVEESVNGASRISEKLKNLCQWSVA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1820g00003 173 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 167 - -
Vium1820g00003 173 MobiDBLite consensus disorder prediction 1 20 - -
Vium1820g00003 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 73 IPR036638 GO:0046983
Vium1820g00003 173 Gene3D - 2 90 IPR036638 GO:0046983
Vium1820g00003 173 Coils Coil 49 76 - -
Vium1820g00003 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Vium1820g00003 173 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Vium1820g00003 173 FunFam Transcription factor bHLH162 1 85 - -
Vium1820g00003 173 SMART finulus 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1820g00003 Vium-Chr1820 64233 65201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1820g00003 3 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.094 8.73e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1820g00003 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1820g00003 - - gmx:100810793 261.536