Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1816g00015 ATGGTTCTAGACAAGAATGCGATTCAGGAAACCCATTATAAGGTTCTTAATGTGAAAGAAGATGCAAATTATGAAGAAATTCGTGTCAGTTATCGCAGTGCTGTACTCAGCTTACATCCTGATAAGCTGTTGAAGTCGTCGGAGACATCCAACAGTAATGAAATAAATGGAGAGAGATTTCTGAAAGTACAGAAGGCATGGGAAATTCTGAGTGATTCAAGCTCCCGCTCTTGTTATGATAAGGAGCTGCGAAGCACAAGACAGGATTTCTTGGCTGCTGAAGTTGCAGAGGATTTAAGCTTAGAGGATATGATGGTTGAAGATGCCGGAGAAGCATTGGAACTGTTGTATCAATGCCGATGTGGTGATTACTTTTCTGTAGATTCATTGGAACTGAAGAAAATGGGTTATTCCTTATTGAGGGAGGGAAGTGGGATATCTATACTCAATGTTGATACTTTACCAGGATCAGTGATTCTTCCTTGTGGTTCTTGTTCATTGAAAGCTCGTCTGTTAATCAGTATGGATGACATTTGA 537 0.4004 MVLDKNAIQETHYKVLNVKEDANYEEIRVSYRSAVLSLHPDKLLKSSETSNSNEINGERFLKVQKAWEILSDSSSRSCYDKELRSTRQDFLAAEVAEDLSLEDMMVEDAGEALELLYQCRCGDYFSVDSLELKKMGYSLLREGSGISILNVDTLPGSVILPCGSCSLKARLLISMDDI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1816g00015 178 Gene3D DPH Zinc finger 89 178 IPR036671 -
Vium1816g00015 178 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vium1816g00015 178 PRINTS DnaJ domain signature 55 75 IPR001623 -
Vium1816g00015 178 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vium1816g00015 178 Pfam CSL zinc finger 98 172 IPR007872 -
Vium1816g00015 178 SMART dnaj_3 10 75 IPR001623 -
Vium1816g00015 178 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Vium1816g00015 178 PANTHER DPH3 HOMOLOG-RELATED 11 176 IPR044248 GO:0017183|GO:0046872
Vium1816g00015 178 FunFam DNAJ heat shock N-terminal domain-containing protein-like 89 177 - -
Vium1816g00015 178 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Vium1816g00015 178 Gene3D DnaJ domain 1 88 IPR036869 -
Vium1816g00015 178 SUPERFAMILY Chaperone J-domain 10 84 IPR036869 -
Vium1816g00015 178 CDD DnaJ 11 72 IPR001623 -
Vium1816g00015 178 SUPERFAMILY CSL zinc finger 96 177 IPR036671 -
Vium1816g00015 178 Pfam DnaJ domain 11 80 IPR001623 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1816g00015 12 80 C2H2 Transcription Factor Family AT1G74250 39.130 3.46e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1816g00015 K17867 - gmx:100814856 298.901