Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1816g00008 ATGGCTCCCAAGCGTGGTGGAAAAGCCCCGGTTCCTGCCTCTAAGAAGAAGCCTGCTCAGGAGAAGGTTACTAACCCGCTTTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGAGCGTTGCCGCCGAAGAGAGACTTGACTCGGTTCGTCAAGTGGCCCAAGACCGTTCAGATTCAGAGGAAGAAAAGGATTCTGAAACAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTTACGAAGACACTCGACAAAAACCTAGCAACAAGTCTGTTTAAGATCCTGTTGAAGTACAGGCCAGAGGATAAAGCAGAAAAGAAGGAGAGACTTTTGAAAAGGGCACAGGCAGAGGCTGAGGGTAAAACTATCGAGGCCAAGAAGCCTATTAATGTGAAATATGGTCTCAACCATGTTACCTACCTCATTGAGCAGAACAAAGCCCAGCTTGTTGTGATTGCTCACGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAAATGGAAATCCCATACTGCATTGTGAAAGGAAAGGCGCGCTTGGGAACGGTCGTCCACAAGAAAACCGCATCTGTTTTGTGCTTGACAACTGTAAAGAATGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAGGCTATCAAGGCTAACTTCAATGACAAGTATGACGAATACAGAAAGAAATGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAAACCCGGGCAAAGGAAAAGCTTCTGGCCAAGGAAGCTGCTCAGAGAATGTCTTAG 786 0.4733 MAPKRGGKAPVPASKKKPAQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTIEAKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1816g00008 261 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 119 208 IPR004038 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A/RS6 family signature 166 176 IPR018492 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A/RS6 family signature 176 190 IPR018492 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A/RS6 family signature 131 145 IPR018492 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A/RS6 family signature 150 163 IPR018492 -
Vium1816g00008 261 ProSitePatterns Ribosomal protein L7Ae signature. 169 186 IPR004037 GO:0042254|GO:1990904
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 188 212 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 127 147 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 93 106 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 32 49 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 49 66 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 220 240 IPR001921 -
Vium1816g00008 261 PRINTS Ribosomal protein L7A family signature 69 88 IPR001921 -
Vium1816g00008 261 MobiDBLite consensus disorder prediction 1 27 - -
Vium1816g00008 261 FunFam 60S ribosomal protein L7a 53 236 - -
Vium1816g00008 261 Coils Coil 104 124 - -
Vium1816g00008 261 SUPERFAMILY L30e-like 91 232 IPR029064 -
Vium1816g00008 261 Gene3D - 53 236 IPR029064 -
Vium1816g00008 261 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 45 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1816g00008 Vium-Chr1816 28853 30869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1816g00008 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.057 1.75e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1816g00008 K02936 - gmx:100792324 469.159