Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1816g00006 ATGAGTTCTCGGACAGGCAAGGGACCTGCTGTCAGAAGCTACCGGAGGAGAAAGGCAGTTTTGGACCTTGACCTTAATCTTGTGCCGGCTAGTGACAATCGTGAGCACGAGGGACCTTCAACACAGTCAGGGCCACTAGGAGTTATAGTTGAACAGCAGCCACCGGCCTCTCAACCAACGATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAGGCGCTTTTGCTGAGGCTAAAAACAAATCAAGAAGAATCCGTGGGAGGACTATAGTTGATGTTGAACTAGAAGATCAGACTCGGCGCAACAAGCGCAGACGAGAATTGCGAAATCAAACAATTATTAATTGTGAGAAGTATATAAATTTAGAAGGCAGTAGCAGTTCTATGAGTGATAGTGCTAAAGTGCTTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 621 0.4428 MSSRTGKGPAVRSYRRRKAVLDLDLNLVPASDNREHEGPSTQSGPLGVIVEQQPPASQPTMIDVEDIDDDVVECTPGAFAEAKNKSRRIRGRTIVDVELEDQTRRNKRRRELRNQTIINCEKYINLEGSSSSMSDSAKVLPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1816g00006 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 205 IPR013083 -
Vium1816g00006 206 SMART ring_2 151 188 IPR001841 -
Vium1816g00006 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vium1816g00006 206 MobiDBLite consensus disorder prediction 26 48 - -
Vium1816g00006 206 PANTHER ELFLESS, ISOFORM B 1 206 - -
Vium1816g00006 206 SUPERFAMILY RING/U-box 150 195 - -
Vium1816g00006 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vium1816g00006 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1816g00006 Vium-Chr1816 20912 25042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1816g00006 12 205 C3H Transcription Factor Family AT5G48655 54.229 5.82e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1816g00006 K22651 - gmx:100306616 305.064