Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1816g00003 ATGCGATTTTTCTTGTTGCTGCTTGGGTACGGGAGTAGTGTACCAATGAGTTCTCGGACAGGCAAGGGACCTGCTGTCAGAAGCTACCGGAGGAGAAAGGCAGTTTTGGACCTTGACCTTAATCTTGTGCCGGCTAGTGACAATCGTGAGCACGAGGGACCTTCAACACAGTCAGGGCCACTAGGAGTTATAGTTGAACAGCAGCCACCGGCCTCTCAACCAACGATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAGGCGCTTTTGCTGAGGCTAAAAACAAATCAAGAAGAATCCGTGGGAGGACTATAGTTGATGTTGAACTAGAAGATCAGACTCGGCGCAACAAGCGCAGACGAGAATTGCGAAATCAAACAATTATTAATTGTGAGAAGTATATAAATTTAGAAGGCAGTAGCAGTTCTATGAGTGATAGTGCTAAAGTGCTTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 666 0.4444 MRFFLLLLGYGSSVPMSSRTGKGPAVRSYRRRKAVLDLDLNLVPASDNREHEGPSTQSGPLGVIVEQQPPASQPTMIDVEDIDDDVVECTPGAFAEAKNKSRRIRGRTIVDVELEDQTRRNKRRRELRNQTIINCEKYINLEGSSSSMSDSAKVLPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1816g00003 221 PANTHER ELFLESS, ISOFORM B 16 221 - -
Vium1816g00003 221 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Vium1816g00003 221 SUPERFAMILY RING/U-box 165 210 - -
Vium1816g00003 221 MobiDBLite consensus disorder prediction 43 63 - -
Vium1816g00003 221 SMART ring_2 166 203 IPR001841 -
Vium1816g00003 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 220 IPR013083 -
Vium1816g00003 221 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Vium1816g00003 221 Pfam Zinc finger, C3HC4 type (RING finger) 165 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1816g00003 Vium-Chr1816 20910 25042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1816g00003 27 220 C3H Transcription Factor Family AT5G48655 54.229 8.82e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1816g00003 K22651 - gmx:100306616 305.064