Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1816g00001 ATGGTAGTGATCATGCAACAGCAGCAGCAACAACAGCAACAGCAGAATCCTTCTGCACTGGTGCCGCACTTAAAAATTCCCCAATCCTCCACCTCCACCGTCGCCGCCGCCACCACAACCCCCGCCGCCACTTCCATTAGGTCGCCTTCCTCGCAGTCGCCGCTCTCCGTCGTCGCTCCCCTCCGCCAACCCCCGCTCACCTCGCATCCCTTGCCGGTTACGGCGGTGGAGTCTGCTTTGACGGCGGTACCGACGTGTCCGCTGGTGAGAGTCCGCCTCTCGGACATTGCCTCCTATGACGGGGCACCGGCGGGGTCGTATCTGAGAGCAATGGAGGCGCTGTGTGGGTCTCTGCTGCGGCACAATGCCGCGTTGATCCAATTGGGGAGCGAGGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCACGGTTGTTTTTCAGAAGTAGGGCCCAACTTGGTGTTGGAAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTATTCTCCCCCCTGCATGGCTGATATTTATCGATGCATGGGAAAGGTGTCTCGATCTGCCTTGAGTGCCATTGCAAGATATTTACGTCTTAGAAGCGACGTTTTTAACCATTTGCTTGATGATTCTCCGTTGCCTGCTAATGAGGTGTCATCGTCAGTTCTTGTTGCAACATACTCAAATTCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGTGGTAAGCCTACCATGAATGGTGAAGTTGAAAAGGGATTGTTGACGTTGATTTCTTCTGACACTCCTGGTCTTCAGATATGTGACCCCAGTGGGCGCTGGTATCTGGCAGACAGTGGTTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGTTATGCTACTGCTGGTCTACGACCTGCAGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACTGGGCAATGCTATATTAGATTGTTCCCCAATAGCAGCAGCTGGCCATATTATTCCCCAAAGATATGTTCGAATTTCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAATTGATAGGCAGCAGATGTGATAATGCTGATGTTGCTGCTCAAAACAGTATGAACAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGTTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTTATTGAAACATCCAGATGTACTCTCTGCAATACAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTAAACAGGGAAAATGGAGATTATAGTGCTCCTGATGGACTTCAGCGGGGGGTGCAATATCCATTTTCGGTAAACGAGAAAGTTATTATTAAGGGTAACAGAAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTCTGATTACATCTCAGTGTCTCAATGGCTGGTGA 1644 0.4872 MVVIMQQQQQQQQQQNPSALVPHLKIPQSSTSTVAAATTTPAATSIRSPSSQSPLSVVAPLRQPPLTSHPLPVTAVESALTAVPTCPLVRVRLSDIASYDGAPAGSYLRAMEALCGSLLRHNAALIQLGSEDTALMRCGLEGARLFFRSRAQLGVGKGSRGVYMYRAGRALEDWDYSPPCMADIYRCMGKVSRSALSAIARYLRLRSDVFNHLLDDSPLPANEVSSSVLVATYSNSSLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQICDPSGRWYLADSGSGPGDLLLITGKALSYATAGLRPAASYRASPDYFLSPNGGGRTSLAYRLMPLGNAILDCSPIAAAGHIIPQRYVRISVSQFMDDLAAEELIGSRCDNADVAAQNSMNKEPSLRSVLSDPLSGTFLEDAMFVSCGHSFGGLMLRRVIETSRCTLCNTEIETGSLIPNLALRAAAAAVKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDYSAPDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEALITSQCLNGW 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1816g00001 547 Gene3D - 170 376 IPR027443 -
Vium1816g00001 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 467 IPR013083 -
Vium1816g00001 547 SUPERFAMILY RING/U-box 398 464 - -
Vium1816g00001 547 MobiDBLite consensus disorder prediction 37 56 - -
Vium1816g00001 547 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 86 547 - -
Vium1816g00001 547 SUPERFAMILY Clavaminate synthase-like 179 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1816g00001 Vium-Chr1816 546 9139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1816g00001 398 547 Plant U-box Gene Family AT5G05230 38.667 4.46e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1816g00001 - - vum:124827961 1021.92