Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium180g00005 ATGATGGAGGGCTATTCTCTTCCACCACCGCCCGGTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAGGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTTCCTTTAAATCCATGCTTCAACAACAGCCTCAACAACCACAACCACAGCCACCACAACTTGACTTTTACTTCAACTTCAACATCAACTCTGCTATTCCCATTCCCTTTGTTCCTACTATGGAATCTTTTCCCCCTCTGGACCCCTTCTCACCTTCACTTTCATCGTCTCCTTTTTTCAACAACAGCAACAACACCAGCATGCCCTTTGACCCGGGCTTTGACTTGGGCCTCGACAACGGGCTTCACTCTTCGTGCCCCCCTCTTTTCTCCCAGGTTCAGCCGGGCTTCGAGTTTGGAGAACTGGAAGCTCTTACTGCTGCACCTGGGCATGTGCCCTTTATGGAGGGACCGAAGGGGGAGAATCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGCTGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCTGGGCTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGAGAAGTGAGAATGGTGAAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCCAAAAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATCAATGATCTCCATAACGAGCTGGAGACTACTTCGGCGGGCTCGTCACTGCTGCCGTCTGCTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACTCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAATCAACCTGCAAAGGTTGAAGTTAGAGCAAGAGAAGGGAGAGCTGTGAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTGTCTACCATGAGGGCTTTGGACAACCTCGGATTGGATGTACAGCAGGCTGTAATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTACCTGAGCAAATCAAAGCAGTGCTCTTGGATTCAGCAGGGTTTCATGGTATGATGTGA 1299 0.5189 MMEGYSLPPPPGEEDAPPPSWGRPNSQEEDIAIALGAPLSFKSMLQQQPQQPQPQPPQLDFYFNFNINSAIPIPFVPTMESFPPLDPFSPSLSSSPFFNNSNNTSMPFDPGFDLGLDNGLHSSCPPLFSQVQPGFEFGELEALTAAPGHVPFMEGPKGENPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEAEEGSSADVDGSGLNYESDENDNGNNGLKRSENGEDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTSAGSSLLPSASTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQPAKVEVRAREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium180g00005 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Vium180g00005 432 CDD ACT_UUR-ACR-like 361 402 - -
Vium180g00005 432 CDD bHLH_AtAMS_like 242 307 - -
Vium180g00005 432 MobiDBLite consensus disorder prediction 219 246 - -
Vium180g00005 432 Gene3D - 231 304 IPR036638 GO:0046983
Vium180g00005 432 MobiDBLite consensus disorder prediction 172 246 - -
Vium180g00005 432 MobiDBLite consensus disorder prediction 1 29 - -
Vium180g00005 432 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 110 428 - -
Vium180g00005 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 313 IPR036638 GO:0046983
Vium180g00005 432 Pfam Helix-loop-helix DNA-binding domain 246 288 IPR011598 GO:0046983
Vium180g00005 432 FunFam BHLH transcription factor 235 303 - -
Vium180g00005 432 SMART finulus 245 294 IPR011598 GO:0046983
Vium180g00005 432 MobiDBLite consensus disorder prediction 172 198 - -
Vium180g00005 432 Coils Coil 285 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium180g00005 Vium-Chr180 27716 30769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium180g00005 165 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 68.163 6.30e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium180g00005 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium180g00005 - - vun:114162308 719.924