Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1808g00001 ATGTCTGCTGTTAACAGCGATCGTCGAATGGGGGCTTCCTTGCTTCGTCTTCATTTCCATGATTGCTTTGTTCAAGGATGTGATGCATCAGTACTATTGGATGATACGTCAAGTTTCACAGGTGAGAAATCAGCGGGTCCCAACGCTAATTCCCTGAGAGGGTTTGATGTAATAGACACCATAAAGTCTAAAGTGGAGAGCTTATGTCCTGGTGTTGTTTCTTGTGCTGATATACTTACCGTAGCAGCAAGAGACTCGGTAGTTGCACTTGGTGGAGCTAGTTGGACTGTGCCTTTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGGTCCCAGTTCAAGCTTAAGTGCTCTCATCTCTTCTTTCTCCAACAAAGGTTTTACGGCTAAAGAACTGGTTGCTCTTTCAGGATCGCACACAATTGGGCAAGCCAGGTGCGCAACTTTCAGAAGAAGGATTTACAACGACACGAACATAGATTCCTCTTTTGCAACATCATTGCAAGCAAATTGCCCAAGCGTAGGTGGTGACAGCACGTTGTCCCCTCTTGACACGACCAGCCCAAACACCTTTGACAATGCATACTTCAAGAATTTGCAGAGCAAGAAGGGTCTTCTGCACTCAGACCAAGAGCTTTTCAATGGCGGATCCACTGACTCTCAAGTAAATGCTTATAGCAGCAACCCTGCAAGTTTCAAAGCTGACTTTGCCAATGCGATGGTTAAAATGGGGAACCTTAGTCCACTCACTGGCTCCAGTGGCCAGATCAGAACCAACTGTAGGAAGACCAACTAA 819 0.4603 MSAVNSDRRMGASLLRLHFHDCFVQGCDASVLLDDTSSFTGEKSAGPNANSLRGFDVIDTIKSKVESLCPGVVSCADILTVAARDSVVALGGASWTVPLGRRDSTTASLSSANSDLPGPSSSLSALISSFSNKGFTAKELVALSGSHTIGQARCATFRRRIYNDTNIDSSFATSLQANCPSVGGDSTLSPLDTTSPNTFDNAYFKNLQSKKGLLHSDQELFNGGSTDSQVNAYSSNPASFKADFANAMVKMGNLSPLTGSSGQIRTNCRKTN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1808g00001 272 PRINTS Haem peroxidase superfamily signature 11 25 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Haem peroxidase superfamily signature 73 90 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Haem peroxidase superfamily signature 91 103 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Haem peroxidase superfamily signature 139 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 SUPERFAMILY Heme-dependent peroxidases 3 272 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 ProSitePatterns Peroxidases active site signature. 11 22 IPR019794 GO:0004601
Vium1808g00001 272 FunFam Peroxidase 1 125 - -
Vium1808g00001 272 ProSitePatterns Peroxidases proximal heme-ligand signature. 139 149 IPR019793 -
Vium1808g00001 272 Gene3D - 2 269 - -
Vium1808g00001 272 PANTHER PEROXIDASE 72-RELATED 2 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 FunFam Peroxidase 117 251 - -
Vium1808g00001 272 CDD secretory_peroxidase 2 271 IPR033905 GO:0004601|GO:0042744
Vium1808g00001 272 ProSiteProfiles Plant heme peroxidase family profile. 1 272 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 Pfam Peroxidase 3 235 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 53 66 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 206 223 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 72 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 190 205 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 246 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 13 33 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 138 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 PRINTS Plant peroxidase signature 91 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1808g00001 272 Gene3D Peroxidase, domain 2 117 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1808g00001 Vium-Chr1808 21724 23854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1808g00001 2 272 Peroxidase AT5G05340 67.033 6.92e-135 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1808g00001 K00430 - gmx:100815142 495.352