Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1807g00002 ATGCCGGAATCGGAGACAGGGACGCCGACGGCTGCTTCGGTGCCGGCGACGCCAGATACTCCCGGCGGACCGCTGTTCACGTCGCTGCGTGTGGACTCGCTGTCGCACGAGCGTGACTCGTTCACCATGGCCAGATGCAAGTGCTTGCCGAGCAAAGGTAACACCTGCTTCACCGATTTCTCCGTTGGTGTTTCACTGCCCAATGTTTCTCTCACTCAAAAGGTGGGAGCAGAGTTTGTGGGGACATTCATATTGATATTCGCAGCAACGGCTGGACCGATAGTGAACAACAAGTACAACGGAGTGGAGACTCTGATGGGAAATGCAGCATGTGCAGGGTTAACAGTGATGTTCATTATCCTCTCAATTGGACACATCTCAGGCGCACATCTCAACCCATCACTCACCATTGCCTTCGCCGCCTTTCGCCACTTCCCTTGGACCCATGTCCCTGCCTACATTGCAGCTCAAGTCTCCGCCTCCATCTGTGCCTGTTTCTTTGCTCTCAAAGCGTTTACACCTTTCCTCTCCGTGGGGTCACCGTCCATTACTTGTCACCCGTTTGGTCAGCCTTTGCAACTGAGTTCTTCTGCTAATTTTCTTTCTCTTTCTCTCGTAACACATTCCTTTGCTGCTGCTATGCAGGTCGGTGAATTGGCGGGTATTGCTGTTGGGGCTACAGTTTTGCTCAACATTCTCATATCAGGGCCAACAAGTGGTGGTTCGATGAATCCAGTGCGTACGTTAGGTCCTGCCGTTGCAGCAGGAAATTACACGCATATATGGATCTATTTGGTGGCTCCTACGCTGGGTGCCCTCGCCGGTGCCGGCGTTTACACGCTCGTCAAGCTCCGTGACAACGAGGCTGAACCACCGCGACAGGTTAGAGTTTCCGTCGCCTAG 903 0.5349 MPESETGTPTAASVPATPDTPGGPLFTSLRVDSLSHERDSFTMARCKCLPSKGNTCFTDFSVGVSLPNVSLTQKVGAEFVGTFILIFAATAGPIVNNKYNGVETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACFFALKAFTPFLSVGSPSITCHPFGQPLQLSSSANFLSLSLVTHSFAAAMQVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYTHIWIYLVAPTLGALAGAGVYTLVKLRDNEAEPPRQVRVSVA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1807g00002 300 Pfam Major intrinsic protein 68 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 PANTHER AQUAPORIN NIP2-1 55 288 IPR034294 -
Vium1807g00002 300 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Vium1807g00002 300 MobiDBLite consensus disorder prediction 1 15 - -
Vium1807g00002 300 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1807g00002 300 Gene3D Glycerol uptake facilitator protein. 64 295 IPR023271 -
Vium1807g00002 300 MobiDBLite consensus disorder prediction 1 24 - -
Vium1807g00002 300 SUPERFAMILY Aquaporin-like 69 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1807g00002 Vium-Chr1807 24551 28437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1807g00002 25 296 Major Intrinsic Protein MIP AT4G10380 65.108 1.44e-117 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1807g00002 K09874 - gmx:100804356 486.878