Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1806g00002 ATGTTTGTCCTGGAGAATGGTGCGAAGAAGGGGGAAGACCCAAGGCTTCAGGCCATCTCCCAAGCCATCAGAGTGGTGCCTCACTTCCCCAAACAAGGAATAATGTTTCAAGACATAACAACATTGTTGTTGGATCACAACGCGTTCAAAGACACGGTTGACATTTTTGTTGATCGTTACAGAGACATGGATATTTCTGTTGTTGCTGGGGAAGTAATTTCTGAAAAATATGTTCTAGAATATGGCACTGATTGTTTGGAGTTGCATGTTGGGGCTGTTCAGTCCAGCGAACGTGTCATAATTATTGATGATTTGGTGGCCACAGGTGGAACTCTATCAGCAGCAATTAGACTTCTAGAACTTGCTGGTGCTGAAGTAGTGGAGTGTGCTTGTGTGATTGGTCTCTCTGATCTCAAGGTACGAAGCAAGCTTAATGGAAAGCCACTTTATATCCTTTTGGAGCCACGTCAACCAGAAAATGGTTATTGA 489 0.4356 MFVLENGAKKGEDPRLQAISQAIRVVPHFPKQGIMFQDITTLLLDHNAFKDTVDIFVDRYRDMDISVVAGEVISEKYVLEYGTDCLELHVGAVQSSERVIIIDDLVATGGTLSAAIRLLELAGAEVVECACVIGLSDLKVRSKLNGKPLYILLEPRQPENGY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1806g00002 162 Gene3D - 6 70 IPR029057 -
Vium1806g00002 162 SUPERFAMILY PRTase-like 22 147 IPR029057 -
Vium1806g00002 162 Gene3D - 71 154 IPR029057 -
Vium1806g00002 162 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 9 70 - -
Vium1806g00002 162 Pfam Phosphoribosyl transferase domain 76 133 IPR000836 -
Vium1806g00002 162 CDD PRTases_typeI 86 154 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1806g00002 Vium-Chr1806 16894 20160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1806g00002 12 154 PRT Gene Family AT1G27450 54.023 1.69e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1806g00002 K00759 - gmx:100775389 277.715