Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1805g00005 ATGGACAAGAAGCTGGCCCTTTTCTACATTTTTTCAACAGTGTTGGTTAGTGTTCTGGCTGAACCACTGGAGGATAAGCAGGCGCTGCTTGATTTCCTTGACAGCATGCATCACTCTCCTCATGTCAACTGGGAAGAGAACACTTCTGTTTGCCAAAGCTGGAGAGGAGTGACTTGCAACTCTGACGAGTCTCGAGTAACAGCCCTTCGATTGCCAGGAGCTGGTTTGAGTGGTCCAATCCCACCCAACACTCTGAGTCGCCTCTCAGCACTTGAGATTGTGAGTCTCAGATCAAATGGTATATCAGGCCCTTTCCCTGATGGTTTCTCTGAGCTGAAAAATTTGACCAGCCTCTATCTTCAATCTAACAAGTTTTCCGGGCCACTACCATTGGATTTTTCAGTTTGGAATAATCTCAGTGTTGTCAATTTATCCAACAATTATTTTAATGGGAGTATCCCTTTTTCAATTTCAAATCTGACTCATCTCACTTCATTAGTCCTTGCCAATAACTCCCTTACGGGTGAGATTCCTGATCTCAATATTCCTAGCCTGGAGGAGCTGAATTTAGCCTACAATAACCTTAGTGGGGTTGTGCCTAAATCTCTTCTTAGATTTCCTAGTTCAGCCTTTGCTGGTAACAATCTTACATCAGCAACAGCACTTCCTCCGGCCTTTCCTGTGGAACCACCGGCGGTTCCTCCAGGGGAAAAATCCAAAGGACTCAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTTCCGTGCTGGGGTTTGTGGTGATTGCAGGTTTCTTGATTGTGTGCTGCTATCAGAATGCAGACGTGGATGTGCAACCAATGAAATCCCAGAATAAACAAACCTCTCTGAAAACAGAATCTTCCGGAAGTCAAGACAAAAACAATAAAATTGTCTTCTTTGAGGGTAGCAATCTTGCATTTGATCTAGAGGACCTGTTGAGAGCATCTGCTGAGATTCTTGGCAAAGGTACCTTTGGCATGACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTCAAGAGGTTGAAGGAGGTCACTGTTGGAAAACGAGATTTTGAACAGCAGATGGAGGTGGTGGGGAGAATAAAGCACGACAATGTGGATGCAGTGAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACAAGGAAGCGTCTCTGCAATGTTACATGGCAAAGGAGGGGAAGGTAGAAGTGCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATTGGTGCAGCGAGAGGCATTGCACGCATCCACTCACAACATGGCGGGAAACTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCATCAACTCCCAAGGATATGGATGCATATCTGATATTGGCTTGGCAACATTGATGAGTCCAATACCTGTCCCTGCCATGAGAACAACTGGATACCGTGCACCAGAAGTAACTGACACGCGTAAAGCAAGCCATGCATCTGATGTCTACAGTTTTGGGGTGCTAGTACTCGAGCTTCTGACTGGGAAATCGCCCATAAACAGCACAGAAGGTGAACAGGTTGTCCACTTGGTTAGATGGGTGAATTCTGTTGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCCAACATAGAAGAAGAAATGGTTGGGATGCTACAAATAGGGATGGCTTGTGCTGCAAGGATACCGGATCAAAGACCGAAGATGCCTGACGTGGTGAAAATGGTTGAAGAGATTCGCCGTGTAAATACCCCAAATCTACCATCTACGGAGTCTCGGTCAGAAGTTTCTACACCCACACCTCGTGCAGTGGACATACCTTCTACCTCTGTTCAACACTGA 1881 0.4545 MDKKLALFYIFSTVLVSVLAEPLEDKQALLDFLDSMHHSPHVNWEENTSVCQSWRGVTCNSDESRVTALRLPGAGLSGPIPPNTLSRLSALEIVSLRSNGISGPFPDGFSELKNLTSLYLQSNKFSGPLPLDFSVWNNLSVVNLSNNYFNGSIPFSISNLTHLTSLVLANNSLTGEIPDLNIPSLEELNLAYNNLSGVVPKSLLRFPSSAFAGNNLTSATALPPAFPVEPPAVPPGEKSKGLSEPALLGIIIGASVLGFVVIAGFLIVCCYQNADVDVQPMKSQNKQTSLKTESSGSQDKNNKIVFFEGSNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVVVKRLKEVTVGKRDFEQQMEVVGRIKHDNVDAVRAYYYSKEEKLIVYDYYQQGSVSAMLHGKGGEGRSALDWDSRLRIAIGAARGIARIHSQHGGKLVHGNIKASNIFINSQGYGCISDIGLATLMSPIPVPAMRTTGYRAPEVTDTRKASHASDVYSFGVLVLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVGMLQIGMACAARIPDQRPKMPDVVKMVEEIRRVNTPNLPSTESRSEVSTPTPRAVDIPSTSVQH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1805g00005 626 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 396 601 - -
Vium1805g00005 626 Pfam Protein tyrosine and serine/threonine kinase 325 537 IPR001245 GO:0004672|GO:0006468
Vium1805g00005 626 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Vium1805g00005 626 SUPERFAMILY L domain-like 35 206 - -
Vium1805g00005 626 FunFam pollen receptor-like kinase 1 290 395 - -
Vium1805g00005 626 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Vium1805g00005 626 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Vium1805g00005 626 Gene3D Ribonuclease Inhibitor 24 138 IPR032675 -
Vium1805g00005 626 Gene3D Phosphorylase Kinase; domain 1 285 395 - -
Vium1805g00005 626 SUPERFAMILY Protein kinase-like (PK-like) 325 590 IPR011009 -
Vium1805g00005 626 PANTHER OS05G0588300 PROTEIN 7 602 - -
Vium1805g00005 626 Gene3D Ribonuclease Inhibitor 139 223 IPR032675 -
Vium1805g00005 626 ProSiteProfiles Protein kinase domain profile. 321 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1805g00005 626 MobiDBLite consensus disorder prediction 596 626 - -
Vium1805g00005 626 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
Vium1805g00005 626 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1805g00005 Vium-Chr1805 32457 36445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1805g00005 20 613 Receptor kinase-like Gene Family AT4G23740 57.166 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1805g00005 PK_Tyr_Ser-Thr 4.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1805g00005 - - gmx:100813065 1083.94