Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1804g00002 ATGAAGCATTCCGAATTCCATGCTGTTTTGCTTTTGTCCATCTTTGTGGGAATCGGCTTAGCTCATCCCACAGAGGATCAGTTAAGGGATAGGATTACCAAGCTGCCAGGACAGCCAGAGAACGTGCTTCTTTCTCAGTACTCGGGCTATGTGACTGTGAATGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGCTAGTAGTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGCCCTGGATGTTCCTCTGTTGCTTATGGAGCAGCTGAAGAAATCGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCCAATCCTTATGCTTGGAACAAATTGGCAAATATACTCTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAACACCACGTCAGATCTGTATACAGCAGGTGACCAGAAAACAGCTGAAGATGCATATACGTTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTACAAGCACAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATCGAGAACCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATAGATGATTACCATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAACTGCTGAGAATTGTGTGTGAGTTTGATTCTTCTCAGCATCCACCAGAGAAATGTGCGGAAGCTTTTGAACTTGCAAGTCTTGAGCAGGGAAACATTGATCCATATAGCATTTATACTCCTGTGTGCAATGCTACAGCTGCAACACTCAAACCCCATTTAAGGGGTCGCTTAGGAAGAGTGTACGGAGCATACGATCCTTGCACTGCGACGTATTCTGAGGTGTATTTCAATCGTCCAGAAGTTCAGAAGGCTCTTCATGCGAACGTAACTGGGATTCCTTATTCATGGACAGGATGCAATGATATTGTTGTTAACAATTGGGGTGATTCTCCGCTTTCTATGCTTCCAATATACCAAGAAATTCTTGATGCTGGCCTCAGGATATGGGTCTACAGTGGAGACACTGATTCAGTGGTGCCTGTAACTGCGAGTCGGTATTCAATTGCTTCATTGAACCTACCTACCATCATCAACTGGTACCCTTGGAATGATAATGGCCAGGTTGGTGGGTGGAGTCAAGTTTACAAGGGACTTACATTTGTTGCAGTAAGAGGTGCAGGGCATGAGGTTCCACTTCATAGACCTCGTCAAGCTTTTACCCTTTTCAAATCATTCCTCCAGAACAAAAACCTGCCATTTTCAACTCTTACCACTCAATCACTGAACCATAAACTTAGATCAGTTAGGCCCAAAAGAAAGATCACTATGCCATCTTCCATGCACCACTTTCCTAGTTAG 1461 0.4305 MKHSEFHAVLLLSIFVGIGLAHPTEDQLRDRITKLPGQPENVLLSQYSGYVTVNEEAGRALFYWLVETEASSSKPLVLWLNGGPGCSSVAYGAAEEIGPFRINPDGKSLYSNPYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGIENPDINFKGFMVGNAVIDDYHDYIGTFEYWWVNGLISDDTYKLLRIVCEFDSSQHPPEKCAEAFELASLEQGNIDPYSIYTPVCNATAATLKPHLRGRLGRVYGAYDPCTATYSEVYFNRPEVQKALHANVTGIPYSWTGCNDIVVNNWGDSPLSMLPIYQEILDAGLRIWVYSGDTDSVVPVTASRYSIASLNLPTIINWYPWNDNGQVGGWSQVYKGLTFVAVRGAGHEVPLHRPRQAFTLFKSFLQNKNLPFSTLTTQSLNHKLRSVRPKRKITMPSSMHHFPS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1804g00002 486 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Vium1804g00002 486 SUPERFAMILY alpha/beta-Hydrolases 29 452 IPR029058 -
Vium1804g00002 486 Gene3D - 308 344 - -
Vium1804g00002 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 436 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 FunFam Carboxypeptidase 355 449 - -
Vium1804g00002 486 FunFam Carboxypeptidase 305 452 - -
Vium1804g00002 486 Pfam Serine carboxypeptidase 36 449 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vium1804g00002 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vium1804g00002 486 FunFam Carboxypeptidase 26 285 - -
Vium1804g00002 486 Gene3D - 355 449 - -
Vium1804g00002 486 ProSitePatterns Serine carboxypeptidases, histidine active site. 419 436 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1804g00002 Vium-Chr1804 44042 47750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1804g00002 313 452 Calmodulin-binding Proteins AT2G22960 29.787 8.31e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1804g00002 K16297 - gmx:100796815 793.882