Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1803g00001 ATGAAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCCAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACAACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTCAAGGAAAGTTGGAGCAGGGAGAAGGAGGTGAAAAGACCAATGGATTCTACTGA 366 0.4508 MKSQKQHLSFEEPSSKELGSSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQGKLEQGEGGEKTNGFY 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1803g00001 121 MobiDBLite consensus disorder prediction 30 53 - -
Vium1803g00001 121 MobiDBLite consensus disorder prediction 1 53 - -
Vium1803g00001 121 Pfam YABBY protein 12 98 IPR006780 GO:0007275
Vium1803g00001 121 MobiDBLite consensus disorder prediction 13 27 - -
Vium1803g00001 121 FunFam axial regulator YABBY 5-like 36 94 - -
Vium1803g00001 121 CDD HMG-box_SF 52 88 - -
Vium1803g00001 121 Gene3D High mobility group box domain 36 93 IPR036910 -
Vium1803g00001 121 PANTHER PROTEIN YABBY 6-RELATED 10 107 IPR006780 GO:0007275
Vium1803g00001 121 SUPERFAMILY HMG-box 43 91 IPR036910 -
Vium1803g00001 121 MobiDBLite consensus disorder prediction 99 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1803g00001 Vium-Chr1803 13630 17244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1803g00001 16 121 C2C2-YABBY Transcription Factor Family AT1G08465 70.093 7.57e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium1803g00001 YABBY 1.5e-38 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1803g00001 K25796 - gmx:100500091 207.994