Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1802g00003 ATGGCTGCACCACTAGGCAATAAACTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTCGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAATCCGCCAACTCGACGGCCTTGCGCCGCCTTGTCGCCAGAGGACTTAACAGAATCAGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGAATACAGACAGTGGTGTGCATTCCTTTATTGGACGGCGTCGTTGAGTTTGGTACAACGGATAAGATTCAAGAAGACCTTAACTTCATCCACCACGTGAAGACATTCTTCGCAGAACACCACCACCCTCTGCCGCCCAAGCCCGCCCTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCTTCCGACCACATCCCCGCCGTCATGTACACTGTCGCAGACCCACCCGCAGCCGATCCCTCCCTAAACGATGAGATGGACGAAGATGAAGAGGAAGAGGATGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGCGGAGTCCGCCTCTGAGGACGAGACCCGAGACCGCATTGCTCGCCGGGTCACGACGCCGGAGATGGAGGACGTGACGAGGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGTTGCCGGAGGATATCCGGGTGGGATCTCCGAACGACGGATCGAACAACTTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAAGGAGGGAACGCGGCGGGGCAGGCCGAGTCGAGCGTGAGATGGGGCCCGAGTGAAGAGGCATTACAAGTTCAACTACCAGCTTCAGCCCCTCATCTATTAGACGACTTGACCCAAGAGGACAATCACTACTCTGAAACCGTGTCCAACATTCTCCAAAACCAGTCTAGCCGGTGGCCCACATCGCCGACCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCACAAAGTGGAGCAGCCGCGCCAGCCACCTCTTCCATCCGGCAGTCGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTATCTCCATGCCAAGAACCCCGCCGACACCTCTCCCCAGACCGCCGCCGACCCCAAGCTGCGCGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCGGAGCGCCGCCGCCGCGAGAAGCTGAACGAGCGGTTCGTAATCCTGCGGTCACTGGTCCCCTTCGTCACCAAAATGGACAAGGCATCCATTCTGGGTGACACCATCGAGTATGTTAAGCAGCTGCGGCGGAAGATCCAGGAGCTTGAGGCGCGCAACCGGCACACTGAGGCGGAACACCGTTCCAAGCTCCCTGAGGTAACGGTTCAAAGGACGAGCAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGCGGCGAAGGCGACGGCGGTGGAGGCTGAGACGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGACGCACTGTTGGAGATCGAGTGCGTCCACAGAGAAGGGTTGCTTCTTGATGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGGGTGCAGTCATCAATTAGCAATGGGGTGTTCATGGCGGAGCTGAGGGCTAAGGTGAAGGAACATGCGAACGGGAAGAAGGTGAGCATTGTGGAAGTGAAGAAGGCACTTAACCAAATCATTCCCCATCCTCTCCACTGA 1992 0.5648 MAAPLGNKLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKIQEDLNFIHHVKTFFAEHHHPLPPKPALSEHSTSNPISSSDHIPAVMYTVADPPAADPSLNDEMDEDEEEEDEEEEEEEEEGAESASEDETRDRIARRVTTPEMEDVTRAEPSELMQLELPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNAAGQAESSVRWGPSEEALQVQLPASAPHLLDDLTQEDNHYSETVSNILQNQSSRWPTSPTSVGYITYSTHSAFTKWSSRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPADTSPQTAADPKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAETATSVQVSIIESDALLEIECVHREGLLLDVMQMLREVRIEVIGVQSSISNGVFMAELRAKVKEHANGKKVSIVEVKKALNQIIPHPLH 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1802g00003 663 MobiDBLite consensus disorder prediction 227 283 - -
Vium1802g00003 663 MobiDBLite consensus disorder prediction 198 217 - -
Vium1802g00003 663 Coils Coil 236 262 - -
Vium1802g00003 663 MobiDBLite consensus disorder prediction 235 262 - -
Vium1802g00003 663 Coils Coil 498 525 - -
Vium1802g00003 663 SMART finulus 465 514 IPR011598 GO:0046983
Vium1802g00003 663 MobiDBLite consensus disorder prediction 436 457 - -
Vium1802g00003 663 MobiDBLite consensus disorder prediction 263 283 - -
Vium1802g00003 663 PANTHER TRANSCRIPTION FACTOR TT8 7 659 - -
Vium1802g00003 663 MobiDBLite consensus disorder prediction 520 550 - -
Vium1802g00003 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Vium1802g00003 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 528 IPR036638 GO:0046983
Vium1802g00003 663 Gene3D - 460 531 IPR036638 GO:0046983
Vium1802g00003 663 Pfam Helix-loop-helix DNA-binding domain 462 509 IPR011598 GO:0046983
Vium1802g00003 663 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Vium1802g00003 663 MobiDBLite consensus disorder prediction 533 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1802g00003 Vium-Chr1802 44658 59277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1802g00003 301 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.808 2.82e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1802g00003 bHLH-MYC_N 9e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1802g00003 - - gmx:100786815 1055.05