Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1801g00014 ATGGAGTCGGATTCTGACTCCGACGGGTCTCACATCTCTGCAACTCCTCCGAGAAATTTAAGTTTGTCGCCACCGCGGCCGCTACCACCACCTCTCGTGGTGTCAAACAAATCCCGAATCAGAATTAAACCCTCAAAATCAAAACCAGCTCCTTCTGGATCCTCCAAAGCCCCGTCAAAACCTGACCCGGTCCTGGAAACCCCTCTCTCCCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGACGCGCCGTCAGTTTCCTCCTCCATCGAAACCCTCCCTGCTGGTTTCTTCTCCTCCTCCCACTCTGCTTCGTTCGCGAAGATTCGAAGACCGCTCATTAACCTAGAACCTTCTGGAATCGAACCAGTTCTTACTCCCACCGCGTCTGATTCACGCGCTGATAGCACCGATGCGAGGACACGCAGAAAGACGCGGCTTCCCAACCTGATAGGTGCTAGCGCACCTATGCCTACCGTGAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTAAACTTGAGTGGCAAGCGAAGGAAGTTCTTGAACAAGAAGGGAAAATCCAGCGGGAAAAGATATAAGAGAGGGAAATTCATATCGAAGCACGAAAGAGAGGGGAAAGAGAAGGATATTGGAGAGATGAAGCAGAGAGGGGATTGTAAGATTCGTGAGATTGATTGCGCTGTAGTGGAAGAGGCTGTGGCTGCGACGCTTGATGAGCCTTCGGAGGAGAATTTGGTGAAGATTTTGAAATTAGTTTATGGTTATGATTGTTTCCGAGACGGGCAGGTTGAGGCAATTCAGATGGTTCTTGCTGGGAAGTCAGGAGCGGTTGTTTTGCCGACCGGTGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAATTGCCTTATGTGATTAAGGGTGGTCTTCTATCTAGTTCTCAGACCCCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGAGATAAAGTTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGGGTTTCTGTCTATCATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCGTCTTTTATGCGACTTAGAGCATCTTTGCTTCGTAAGACACTCAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGGCATCATGTCTGCTCTAGATATCCCTCACTCAAATCTTATTAAGAAGGCGCATTTTAGGGACAATTTTCATTTATCGGTGTCTATGGTCAGAAACAGAATGAAAGATCTACTGATTTTGATAAAGTCTCCTCCTTTTGCGGAAGTTCAGAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAGTTAGCAGATATTTGAATGATCACAGTATCTTGGCGAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTGGCCACGGTGGCATTTGGCATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATTTTTCAAACTTCGTAGTCTTATGTACAGTGAAGGAGTAGACGAATATGCTGTGAGCAAATTTCTGCGTGAAGTCTTTCCTTCTGATAAAAGCTCGTGTGGGAAAATATGCTCATTAATTAAAGAATCTGCTTCACGCAGGCTTGATATGAAGGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGCAATGTGCAGTACTTGCAGTTACTTCCACCGATCAATGCAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGGTATAGCTGCAATTCTAAAAAGATCTGAAAATAAGCGTGGGCAATATATTTTTGACATCCCTACTGTGGCAAATGACATGGGGATTACAGCAGTTACATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCTGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTTAGTGCTGTATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGGCCCAATCACACACCATGCTTGCAAAGGAAAATATTGGAGTATTTTTCTGGAGTTGAAAATGCTGATTTCTGCAAGAAAATTGATGGCCAAAGCAGTCCTTTCCTGCGAGCGGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCCGATTTACACCAAGAGCTGTTGCGAGAATAATGCATGGAATTGCAAGCCCGGCCTATCCTTCAACAACATGGAGTAAAACTCACTTCTGGGGAAGGTATACTCGAATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAACATTTGGTCGGAAAATGTACGCTCTAA 2709 0.4459 MESDSDSDGSHISATPPRNLSLSPPRPLPPPLVVSNKSRIRIKPSKSKPAPSGSSKAPSKPDPVLETPLSLPTDLPFQIRRPSDAPSVSSSIETLPAGFFSSSHSASFAKIRRPLINLEPSGIEPVLTPTASDSRADSTDARTRRKTRLPNLIGASAPMPTVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKSSGKRYKRGKFISKHEREGKEKDIGEMKQRGDCKIREIDCAVVEEAVAATLDEPSEENLVKILKLVYGYDCFRDGQVEAIQMVLAGKSGAVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPYVIKGGLLSSSQTPEEASESLMQLRQGEIKLLFVSPERFLNEGFLSIISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDGIMSALDIPHSNLIKKAHFRDNFHLSVSMVRNRMKDLLILIKSPPFAEVQSIIIYCKFQYETDQVSRYLNDHSILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVSKFLREVFPSDKSSCGKICSLIKESASRRLDMKEEVMLTLLTRLELGNVQYLQLLPPINATCTLAFHKTTPPLLAQKVSGIAAILKRSENKRGQYIFDIPTVANDMGITAVTLTNQLYDLKLMGEITYEMKDMAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVQKMDAMFSAVYFALNLCDKMQGCSGPNHTPCLQRKILEYFSGVENADFCKKIDGQSSPFLRADIKVFLQSNSQARFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTRIDFKVVMEAAKEELKHLVGKCTL 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1801g00014 902 SMART ultradead3 260 453 IPR014001 -
Vium1801g00014 902 Pfam Helicase conserved C-terminal domain 480 573 IPR001650 -
Vium1801g00014 902 Gene3D - 449 641 IPR027417 -
Vium1801g00014 902 FunFam ATP-dependent DNA helicase Q-like 5 450 641 - -
Vium1801g00014 902 PANTHER DNA HELICASE RECQ FAMILY MEMBER 243 764 - -
Vium1801g00014 902 MobiDBLite consensus disorder prediction 1 91 - -
Vium1801g00014 902 MobiDBLite consensus disorder prediction 122 143 - -
Vium1801g00014 902 NCBIfam RecQ family ATP-dependent DNA helicase 253 601 IPR004589 GO:0004386|GO:0006310
Vium1801g00014 902 FunFam ATP-dependent DNA helicase Q4 232 442 - -
Vium1801g00014 902 SMART helicmild6 493 574 IPR001650 -
Vium1801g00014 902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 613 IPR001650 -
Vium1801g00014 902 Pfam DEAD/DEAH box helicase 266 427 IPR011545 GO:0003676|GO:0005524
Vium1801g00014 902 CDD SF2_C_RecQ 450 583 - -
Vium1801g00014 902 CDD DEXHc_RecQ4-like 252 445 - -
Vium1801g00014 902 Gene3D - 234 442 IPR027417 -
Vium1801g00014 902 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Vium1801g00014 902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 442 IPR014001 -
Vium1801g00014 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 592 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1801g00014 Vium-Chr1801 92274 101514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1801g00014 483 602 Eukaryotic Initiation Factors Gene Family AT3G19760 31.967 2.13e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1801g00014 K10730 - gmx:100811214 1415.21