Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1801g00013 ATGGAGTCGGATTCTGACTCCGACGGGTCTCACATCTCTGCAACTCCTCCGAGAAATTTAAGTTTGTCGCCACCGCGGCCGCTACCACCACCTCTCGTGGTGTCAAACAAATCCCGAATCAGAATTAAACCCTCAAAATCAAAACCAGCTCCTTCTGGATCCTCCAAAGCCCCGTCAAAACCTGACCCGGTCCTGGAAACCCCTCTCTCCCTTCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGACGCGCCGTCAGTTTCCTCCTCCATCGAAACCCTCCCTGCTGGTTTCTTCTCCTCCTCCCACTCTGCTTCGTTCGCGAAGATTCGAAGACCGCTCATTAACCTAGAACCTTCTGGAATCGAACCAGTTCTTACTCCCACCGCGTCTGATTCACGCGCTGATAGCACCGATGCGAGGACACGCAGAAAGACGCGGCTTCCCAACCTGATAGGTGCTAGCGCACCTATGCCTACCGTGAAGCCTCGACCATGCAGCGGCGGCGATGGGAACTTCGTGAGGCTAAACTTGAGTGGCAAGCGAAGGAAGTTCTTGAACAAGAAGGGAAAATCCAGCGGGAAAAGATATAAGAGAGGGAAATTCATATCGAAGCACGAAAGAGAGGGGAAAGAGAAGGATATTGGAGAGATGAAGCAGAGAGGGGATTGTAAGATTCGTGAGATTGATTGCGCTGTAGTGGAAGAGGCTGTGGCTGCGACGCTTGATGAGCCTTCGGAGGAGAATTTGGTGAAGATTTTGAAATTAGTTTATGGTTATGATTGTTTCCGAGACGGGCAGGTTGAGGCAATTCAGATGGTTCTTGCTGGGAAGTCAGGAGCGGTTGTTTTGCCGACCGGTGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTCTGATCTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAATTGCCTTATGTGATTAAGGGTGGTCTTCTATCTAGTTCTCAGACCCCTGAAGAAGCCTCTGAATCACTGATGCAGCTTCGACAAGGGGAGATAAAGTTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGGGTTTCTGTCTATCATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCGTCTTTTATGCGACTTAGAGCATCTTTGCTTCGTAAGACACTCAATGTTCGTGCTGTGCTTGCAATGACAGCAACTGCTACTACCACAACTTTAGATGGCATCATGTCTGCTCTAGATATCCCTCACTCAAATCTTATTAAGAAGGCGCATTTTAGGGACAATTTTCATTTATCGGTGTCTATGGTCAGAAACAGGCAAGATATATGCTTCTACATAGTGCTTGAGCTTGTATACTTTCATTGTGTGAACTTTGCTAAACTTATGTTTGAATTCTTTGAACATATTAGAATGAAAGATCTACTGATTTTGATAAAGTCTCCTCCTTTTGCGGAAGTTCAGAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAGTTAGCAGATATTTGAATGATCACAGTATCTTGGCGAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTACAGGACTTGTTTAATTCCAACAAGATCAGAGTGGTTGTGGCCACGGTGGCATTTGGCATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATTTTTCAAACTTCGTAGTCTTATGTACAGTGAAGGAGTAGACGAATATGCTGTGAGCAAATTTCTGCGTGAAGTCTTTCCTTCTGATAAAAGCTCGTGTGGGAAAATATGCTCATTAATTAAAGAATCTGCTTCACGCAGGCTTGATATGAAGGAAGAGGTGATGCTTACTCTTCTGACACGCTTGGAGTTGGGCAATGTGCAGTACTTGCAGTTACTTCCACCGATCAATGCAACTTGCACTTTGGCTTTCCATAAGACTACTCCGCCATTACTTGCCCAAAAAGTATCTGGTATAGCTGCAATTCTAAAAAGATCTGAAAATAAGCGTGGGCAATATATTTTTGACATCCCTACTGTGGCAAATGACATGGGGATTACAGCAGTTACATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATCATTGAAGTCCCTACAGACTTGTTATCACTATCTGAAGATATTACCCAATGGTTATCAGAAGTTGAAAATTGTAAGGTACAAAAAATGGATGCAATGTTTAGTGCTGTATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGGCCCAATCACACACCATGCTTGCAAAGGAAAATATTGGAGTATTTTTCTGGAGTTGAAAATGCTGATTTCTGCAAGAAAATTGATGGCCAAAGCAGTCCTTTCCTGCGAGCGGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCCGATTTACACCAAGAGCTGTTGCGAGAATAATGCATGGAATTGCAAGCCCGGCCTATCCTTCAACAACATGGAGTAAAACTCACTTCTGGGGAAGGTATACTCGAATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAACATTTGGTCGGAAAATGTACGCTCTAA 2802 0.4415 MESDSDSDGSHISATPPRNLSLSPPRPLPPPLVVSNKSRIRIKPSKSKPAPSGSSKAPSKPDPVLETPLSLPTDLPFQIRRPSDAPSVSSSIETLPAGFFSSSHSASFAKIRRPLINLEPSGIEPVLTPTASDSRADSTDARTRRKTRLPNLIGASAPMPTVKPRPCSGGDGNFVRLNLSGKRRKFLNKKGKSSGKRYKRGKFISKHEREGKEKDIGEMKQRGDCKIREIDCAVVEEAVAATLDEPSEENLVKILKLVYGYDCFRDGQVEAIQMVLAGKSGAVVLPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPYVIKGGLLSSSQTPEEASESLMQLRQGEIKLLFVSPERFLNEGFLSIISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLRKTLNVRAVLAMTATATTTTLDGIMSALDIPHSNLIKKAHFRDNFHLSVSMVRNRQDICFYIVLELVYFHCVNFAKLMFEFFEHIRMKDLLILIKSPPFAEVQSIIIYCKFQYETDQVSRYLNDHSILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETFFKLRSLMYSEGVDEYAVSKFLREVFPSDKSSCGKICSLIKESASRRLDMKEEVMLTLLTRLELGNVQYLQLLPPINATCTLAFHKTTPPLLAQKVSGIAAILKRSENKRGQYIFDIPTVANDMGITAVTLTNQLYDLKLMGEITYEMKDMAYCYRIIEVPTDLLSLSEDITQWLSEVENCKVQKMDAMFSAVYFALNLCDKMQGCSGPNHTPCLQRKILEYFSGVENADFCKKIDGQSSPFLRADIKVFLQSNSQARFTPRAVARIMHGIASPAYPSTTWSKTHFWGRYTRIDFKVVMEAAKEELKHLVGKCTL 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1801g00013 933 SMART ultradead3 260 453 IPR014001 -
Vium1801g00013 933 PANTHER DNA HELICASE RECQ FAMILY MEMBER 243 795 - -
Vium1801g00013 933 MobiDBLite consensus disorder prediction 122 143 - -
Vium1801g00013 933 MobiDBLite consensus disorder prediction 1 91 - -
Vium1801g00013 933 Gene3D - 234 442 IPR027417 -
Vium1801g00013 933 FunFam ATP-dependent DNA helicase Q-like 5 450 672 - -
Vium1801g00013 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 623 IPR027417 -
Vium1801g00013 933 Gene3D - 490 672 IPR027417 -
Vium1801g00013 933 SMART helicmild6 524 605 IPR001650 -
Vium1801g00013 933 CDD SF2_C_RecQ 450 614 - -
Vium1801g00013 933 FunFam ATP-dependent DNA helicase Q4 232 442 - -
Vium1801g00013 933 Pfam DEAD/DEAH box helicase 266 427 IPR011545 GO:0003676|GO:0005524
Vium1801g00013 933 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 644 IPR001650 -
Vium1801g00013 933 Pfam Helicase conserved C-terminal domain 511 604 IPR001650 -
Vium1801g00013 933 CDD DEXHc_RecQ4-like 252 445 - -
Vium1801g00013 933 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Vium1801g00013 933 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 442 IPR014001 -
Vium1801g00013 933 NCBIfam RecQ family ATP-dependent DNA helicase 253 632 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1801g00013 Vium-Chr1801 92272 101514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1801g00013 514 633 Eukaryotic Initiation Factors Gene Family AT3G19760 31.967 2.07e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1801g00013 K10730 - gmx:100811214 1399.03