Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium17g00011 ATGACAGAGGAGTTCAACTTCGAATCTGTTCAGCCACCAAAGAAGTCTTCTTTTCAAGAAACTAAGGGACAAAAGGATAAACAAGTGCTGCCATCTTCTCTAGCATCATTAGAGCTCCTGAGAAATTATGGAAGCAGGTTCAATAAGCTAGGGACGCAAAACATCAGGTGTAGTGTTGAAACTTGCTTTAGTCCTCAGAAGTTATCAACTGAAGAACTAATAAGATTGGCCGGAGCAAGGTATCTTCAAAACTCTACACAGTGGCATCATGATATTTGCATCCCCGTGCACCCTTATGGAATGAGCCTTCAGGTTTTATCGGAAGAAGAAAATAGAGGCGTGGAGCTCGCTCAGTTTCTTCTGGCAGCTGTTGATAGGGTAGGGTGCCAGCAATTTGAACGTGCCAGCATGCTACTTTCCCATTTGCTGTGGAACTCCTCAGGTGGTGGTGGAAGCCCCGTTCAGAGAGTTGTCTTTCATTTCTCTCAAGCACTTCTCGAAAGAATCAAAAGACAAACGAGAGGAAAAGTGACATTGAACAAGTGTGAAAAAAACAAGGAAAGGGAAATGATTGAGAAGCTAAGATTGGATACTAACATGGCTGTTACGTGCCATGAAAAAATTCCTTTCAATCAAGTAATGCAGTTTGCTGGGGTGCAAGCAATTGTGGAACATGTGGCATTTCAAACCAGAATCCATCTCATAAACCTTGATATTGGATGTGGGGTGCAATGCACAGCTTTGATGCAAGCACTGGTTGAGAGGCATGAAAGGCAAGTTGAGCTTCTGAAGATAACTGCCATTGGACTTCAAGGTAAAACCAGACTGGAAGAAACAGGGAAAAGGTTAGTGAGTTTTGCTGAATCCTTGAACTTGCCCTTTTTATATAAGATAGTTTTCGTCAGAAGCATCACAGAGATCAAGGCTGAGCAATTTGGAATTGAAGATGACGAAGCTGTAGCTGTTTATTCTCCTTATATGCTGAGGACGATGGTGTCGGATTTTGTCTCTTTGGAACACTTGATGCGGGTGATGACAAAAATCAGACCAACTATAATGATAGTTCTTGAGTTGGAAGCAAAGCACAATTCACCCTCCTTTGTGAATCGCTTCATTGAAGCATTTTTCTTCTATGCAGCATATTTTGACTGCATTTACACCTGCATGAAGCAAGATTATGAGTGCAGAATGCGAATTGAGGGAATATTATCAGAAGGGATACGGAACATTGTTGCTATGGAAGATGGAGAAAGAAAGGTTAGAGATGTAAAGATAGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGGTGGAGACTACATTTAGCGATTCATCATTGTACCAAGCTAACTTGGTTACCAAAAAATTTGAGTGTGGGAATTTCTGCACTGTGGAAAGAAACGGGAAATGCCTAATAATTGGATGGAAAGGAACCACAATTCATTCAATCTCAGCATGGAAGTTTCTTTAA 1473 0.4107 MTEEFNFESVQPPKKSSFQETKGQKDKQVLPSSLASLELLRNYGSRFNKLGTQNIRCSVETCFSPQKLSTEELIRLAGARYLQNSTQWHHDICIPVHPYGMSLQVLSEEENRGVELAQFLLAAVDRVGCQQFERASMLLSHLLWNSSGGGGSPVQRVVFHFSQALLERIKRQTRGKVTLNKCEKNKEREMIEKLRLDTNMAVTCHEKIPFNQVMQFAGVQAIVEHVAFQTRIHLINLDIGCGVQCTALMQALVERHERQVELLKITAIGLQGKTRLEETGKRLVSFAESLNLPFLYKIVFVRSITEIKAEQFGIEDDEAVAVYSPYMLRTMVSDFVSLEHLMRVMTKIRPTIMIVLELEAKHNSPSFVNRFIEAFFFYAAYFDCIYTCMKQDYECRMRIEGILSEGIRNIVAMEDGERKVRDVKIDVWRRFFARYRMVETTFSDSSLYQANLVTKKFECGNFCTVERNGKCLIIGWKGTTIHSISAWKFL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium17g00011 490 MobiDBLite consensus disorder prediction 1 25 - -
Vium17g00011 490 Pfam GRAS domain family 117 488 IPR005202 -
Vium17g00011 490 ProSiteProfiles GRAS family profile. 107 488 IPR005202 -
Vium17g00011 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 478 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium17g00011 Vium-Chr17 48248 49847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium17g00011 102 489 GRAS Transcription Factor Family AT1G66350 27.949 2.84e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium17g00011 GRAS 1.6e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium17g00011 - - gmx:100791952 596.275