Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium17g00009 ATGGTGTCCAAACCTACAGACTCCGTTTCCAGACCTCGAAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCAACAATATCAACAAGGGGTTATTCACAGACAGAGGAAAATAGGAAAATTCCAATTCTTTCTAGAATTGACCGTCCTTTATGTAAATTCAATGGTTTCTCTCCGGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCAAGAGTTCAGAAATTCAGGAGAGGTACAAAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGCCTTCGGAAAACTCAGGAGATCCTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGCAGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAGTATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTAAGCAGTTAAATGAAGTCAAAGGTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGGCAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTGGTAATCAGAGTACATCACCTTTTCCAACAGAAGTTGATTGTCATAGATCTCTCAATTTAAATGTTCCTATCTCAGTAAGTGTGGAGAAACGGAAAGTCACAAATGTGTCTGACACAGCACTTTGTGACTCAACTCCCCTTCCCGATGGTTCTCAAAATTCTAATAAAAAACTGAAGAGTATCTCAGATGATGTAATTACTGTAAATAGTGATTCTAGCAATAACCTTTTGGGTGCATGCGATGAAAGTAAACATACTATTACTTGTGCAATTTTGGACAAATCTGTTAATAATAATTCCAATAAATTAATAGACTCTTCTAGCACTTGCGATACGGATGAACATGACAAAAGTATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTGAAGAAGTTGTCCCCTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGTCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTAGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACTTACATGCATGCTGGAGGAGTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCGTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCGTCAAATCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTTCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2610 0.4126 MVSKPTDSVSRPRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSTISTRGYSQTEENRKIPILSRIDRPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGKSSEIQERYKSIKEKNIGRLDQPSENSGDPESIIGISPEKTLSAALDSFDNLFCRRCLQIFDCRLHGCSQPLVYPSEKQTVWSDPEGDKKPCSDQCYLKQLNEVKGVSEDATSGSDQNKRTTTMEEADGILAPSTIEEPGNQSTSPFPTEVDCHRSLNLNVPISVSVEKRKVTNVSDTALCDSTPLPDGSQNSNKKLKSISDDVITVNSDSSNNLLGACDESKHTITCAILDKSVNNNSNKLIDSSSTCDTDEHDKSIGDGPKDPTNKTELKKLSPSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGVSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFSKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium17g00009 869 SMART set_7 720 841 IPR001214 GO:0005515
Vium17g00009 869 CDD SET_EZH 720 836 - -
Vium17g00009 869 SMART CXC_2 655 692 IPR033467 -
Vium17g00009 869 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 868 IPR045318 GO:0006338|GO:0042054
Vium17g00009 869 ProSiteProfiles SET domain profile. 720 835 IPR001214 GO:0005515
Vium17g00009 869 MobiDBLite consensus disorder prediction 841 869 - -
Vium17g00009 869 MobiDBLite consensus disorder prediction 229 248 - -
Vium17g00009 869 Pfam SET domain 731 834 IPR001214 GO:0005515
Vium17g00009 869 MobiDBLite consensus disorder prediction 848 862 - -
Vium17g00009 869 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 869 IPR025778 GO:0031519
Vium17g00009 869 ProSiteProfiles CXC domain profile. 607 706 IPR026489 -
Vium17g00009 869 SUPERFAMILY SET domain 621 838 IPR046341 -
Vium17g00009 869 Coils Coil 165 185 - -
Vium17g00009 869 MobiDBLite consensus disorder prediction 458 499 - -
Vium17g00009 869 FunFam Putative histone-lysine N-methyltransferase EZH2 621 837 - -
Vium17g00009 869 Gene3D SET domain 621 837 IPR046341 -
Vium17g00009 869 MobiDBLite consensus disorder prediction 460 490 - -
Vium17g00009 869 Pfam CXC domain 659 690 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium17g00009 Vium-Chr17 28719 39995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium17g00009 709 863 C2H2 Transcription Factor Family AT2G23740 24.419 7.44e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium17g00009 SET 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium17g00009 - K11430 pvu:PHAVU_007G213900g 1607.04