Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium17g00008 ATGGTGTCCAAACCTACAGACTCCGTTTCCAGACCTCGAAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCAACAATATCAACAAGGGGTTATTCACAGACAGAGGAAAATAGGAAAATTCCAATTCTTTCTAGAATTGACCGTCCTTTATGTAAATTCAATGGTTTCTCTCCGGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCAAGAGTTCAGAAATTCAGGAGAGGTACAAAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGCCTTCGGAAAACTCAGGAGATCCTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGCAGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAGTATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTAAGCAGTTAAATGAAGTCAAAGGTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGGCAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTGACTCTTCTAGCACTTGCGATACGGATGAACATGACAAAAGTATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTGAAGAAGTTGTCCCCTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGTCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTAGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACTTACATGCATGCTGGAGGAGTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCGTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCGTCAAATCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTTCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2298 0.4225 MVSKPTDSVSRPRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSTISTRGYSQTEENRKIPILSRIDRPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGKSSEIQERYKSIKEKNIGRLDQPSENSGDPESIIGISPEKTLSAALDSFDNLFCRRCLQIFDCRLHGCSQPLVYPSEKQTVWSDPEGDKKPCSDQCYLKQLNEVKGVSEDATSGSDQNKRTTTMEEADGILAPSTIEEPDSSSTCDTDEHDKSIGDGPKDPTNKTELKKLSPSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGVSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFSKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium17g00008 765 ProSiteProfiles SET domain profile. 616 731 IPR001214 GO:0005515
Vium17g00008 765 Pfam SET domain 627 730 IPR001214 GO:0005515
Vium17g00008 765 MobiDBLite consensus disorder prediction 737 765 - -
Vium17g00008 765 Pfam CXC domain 555 586 IPR041355 -
Vium17g00008 765 MobiDBLite consensus disorder prediction 320 339 - -
Vium17g00008 765 CDD SET_EZH 616 732 - -
Vium17g00008 765 MobiDBLite consensus disorder prediction 229 248 - -
Vium17g00008 765 ProSiteProfiles CXC domain profile. 503 602 IPR026489 -
Vium17g00008 765 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 764 IPR045318 GO:0006338|GO:0042054
Vium17g00008 765 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 765 IPR025778 GO:0031519
Vium17g00008 765 SMART set_7 616 737 IPR001214 GO:0005515
Vium17g00008 765 Gene3D SET domain 517 733 IPR046341 -
Vium17g00008 765 SUPERFAMILY SET domain 517 734 IPR046341 -
Vium17g00008 765 SMART CXC_2 551 588 IPR033467 -
Vium17g00008 765 MobiDBLite consensus disorder prediction 744 758 - -
Vium17g00008 765 MobiDBLite consensus disorder prediction 356 386 - -
Vium17g00008 765 Coils Coil 165 185 - -
Vium17g00008 765 FunFam Putative histone-lysine N-methyltransferase EZH2 517 733 - -
Vium17g00008 765 MobiDBLite consensus disorder prediction 345 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium17g00008 Vium-Chr17 28719 39995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium17g00008 605 759 C2H2 Transcription Factor Family AT2G23740 24.419 6.02e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium17g00008 SET 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium17g00008 - K11430 aew:130751223 979.163