Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium17g00006 ATGGTGTCCAAACCTACAGACTCCGTTTCCAGACCTCGAAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCAACAATATCAACAAGGGGTTATTCACAGACAGAGGAAAATAGGAAAATTCCAATTCTTTCTAGAATTGACCGTCCTTTATGTAAATTCAATGGTTTCTCTCCGGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCAAGAGTTCAGAAATTCAGGAGAGGTACAAAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGCCTTCGGAAAACTCAGGAGATCCTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAGTATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTAAGCAGTTAAATGAAGTCAAAGGTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGGCAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTGGTAATCAGAGTACATCACCTTTTCCAACAGAAGTTGATTGTCATAGATCTCTCAATTTAAATGTTCCTATCTCAGTAAGTGTGGAGAAACGGAAAGTCACAAATGTGTCTGACACAGCACTTTGTGACTCAACTCCCCTTCCCGATGGTTCTCAAAATTCTAATAAAAAACTGAAGAGTATCTCAGATGATGTAATTACTGTAAATAGTGATTCTAGCAATAACCTTTTGGGTGCATGCGATGAAAGTAAACATACTATTACTTGTGCAATTTTGGACAAATCTGTTAATAATAATTCCAATAAATTAATAGACTCTTCTAGCACTTGCGATACGGATGAACATGACAAAAGTATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTGAAGAAGTTGTCCCCTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGTCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTAGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACTTACATGCATGCTGGAGGAGTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCGTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCGTCAAATCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTTCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2607 0.4124 MVSKPTDSVSRPRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSTISTRGYSQTEENRKIPILSRIDRPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGKSSEIQERYKSIKEKNIGRLDQPSENSGDPESIIGISPEKTLSAALDSFDNLFCRRCLIFDCRLHGCSQPLVYPSEKQTVWSDPEGDKKPCSDQCYLKQLNEVKGVSEDATSGSDQNKRTTTMEEADGILAPSTIEEPGNQSTSPFPTEVDCHRSLNLNVPISVSVEKRKVTNVSDTALCDSTPLPDGSQNSNKKLKSISDDVITVNSDSSNNLLGACDESKHTITCAILDKSVNNNSNKLIDSSSTCDTDEHDKSIGDGPKDPTNKTELKKLSPSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGVSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFSKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium17g00006 868 ProSiteProfiles CXC domain profile. 606 705 IPR026489 -
Vium17g00006 868 SMART set_7 719 840 IPR001214 GO:0005515
Vium17g00006 868 MobiDBLite consensus disorder prediction 840 868 - -
Vium17g00006 868 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 867 IPR045318 GO:0006338|GO:0042054
Vium17g00006 868 CDD SET_EZH 719 835 - -
Vium17g00006 868 MobiDBLite consensus disorder prediction 229 248 - -
Vium17g00006 868 Pfam SET domain 730 833 IPR001214 GO:0005515
Vium17g00006 868 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 868 IPR025778 GO:0031519
Vium17g00006 868 ProSiteProfiles SET domain profile. 719 834 IPR001214 GO:0005515
Vium17g00006 868 MobiDBLite consensus disorder prediction 457 498 - -
Vium17g00006 868 MobiDBLite consensus disorder prediction 847 861 - -
Vium17g00006 868 MobiDBLite consensus disorder prediction 459 489 - -
Vium17g00006 868 FunFam Putative histone-lysine N-methyltransferase EZH2 620 836 - -
Vium17g00006 868 SMART CXC_2 654 691 IPR033467 -
Vium17g00006 868 SUPERFAMILY SET domain 620 837 IPR046341 -
Vium17g00006 868 Gene3D SET domain 620 836 IPR046341 -
Vium17g00006 868 Coils Coil 165 185 - -
Vium17g00006 868 Pfam CXC domain 658 689 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium17g00006 Vium-Chr17 28719 39995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium17g00006 708 862 C2H2 Transcription Factor Family AT2G23740 24.419 7.43e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium17g00006 SET 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium17g00006 - K11430 pvu:PHAVU_007G213900g 1611.66