Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium17g00005 ATGGTGTCCAAACCTACAGACTCCGTTTCCAGACCTCGAAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCAACAATATCAACAAGGGGTTATTCACAGACAGAGGAAAATAGGAAAATTCCAATTCTTTCTAGAATTGACCGTCCTTTATGTAAATTCAATGGTTTCTCTCCGGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCAAGAGTTCAGAAATTCAGGAGAGGTACAAAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGCCTTCGGAAAACTCAGGAGATCCTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAGTATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTAAGTTAAATGAAGTCAAAGGTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGGCAGATGGGATATTGGCACCCTCCACTATAGAGGAACCTGGTAATCAGAGTACATCACCTTTTCCAACAGAAGTTGATTGTCATAGATCTCTCAATTTAAATGTTCCTATCTCAGTAAGTGTGGAGAAACGGAAAGTCACAAATGTGTCTGACACAGCACTTTGTGACTCAACTCCCCTTCCCGATGGTTCTCAAAATTCTAATAAAAAACTGAAGAGTATCTCAGATGATGTAATTACTGTAAATAGTGATTCTAGCAATAACCTTTTGGGTGCATGCGATGAAAGTAAACATACTATTACTTGTGCAATTTTGGACAAATCTGTTAATAATAATTCCAATAAATTAATAGACTCTTCTAGCACTTGCGATACGGATGAACATGACAAAAGTATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTGAAGAAGTTGTCCCCTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGTCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTAGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACTTACATGCATGCTGGAGGAGTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCGTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCGTCAAATCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTTCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2604 0.4121 MVSKPTDSVSRPRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSTISTRGYSQTEENRKIPILSRIDRPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGKSSEIQERYKSIKEKNIGRLDQPSENSGDPESIIGISPEKTLSAALDSFDNLFCRRCLIFDCRLHGCSQPLVYPSEKQTVWSDPEGDKKPCSDQCYLKLNEVKGVSEDATSGSDQNKRTTTMEEADGILAPSTIEEPGNQSTSPFPTEVDCHRSLNLNVPISVSVEKRKVTNVSDTALCDSTPLPDGSQNSNKKLKSISDDVITVNSDSSNNLLGACDESKHTITCAILDKSVNNNSNKLIDSSSTCDTDEHDKSIGDGPKDPTNKTELKKLSPSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGVSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFSKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium17g00005 867 FunFam Putative histone-lysine N-methyltransferase EZH2 619 835 - -
Vium17g00005 867 SMART set_7 718 839 IPR001214 GO:0005515
Vium17g00005 867 Pfam SET domain 729 832 IPR001214 GO:0005515
Vium17g00005 867 ProSiteProfiles CXC domain profile. 605 704 IPR026489 -
Vium17g00005 867 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 866 IPR045318 GO:0006338|GO:0042054
Vium17g00005 867 SMART CXC_2 653 690 IPR033467 -
Vium17g00005 867 MobiDBLite consensus disorder prediction 456 497 - -
Vium17g00005 867 MobiDBLite consensus disorder prediction 229 248 - -
Vium17g00005 867 MobiDBLite consensus disorder prediction 846 860 - -
Vium17g00005 867 MobiDBLite consensus disorder prediction 458 488 - -
Vium17g00005 867 Pfam CXC domain 657 688 IPR041355 -
Vium17g00005 867 CDD SET_EZH 718 834 - -
Vium17g00005 867 Gene3D SET domain 619 835 IPR046341 -
Vium17g00005 867 ProSiteProfiles SET domain profile. 718 833 IPR001214 GO:0005515
Vium17g00005 867 SUPERFAMILY SET domain 619 836 IPR046341 -
Vium17g00005 867 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 867 IPR025778 GO:0031519
Vium17g00005 867 Coils Coil 165 185 - -
Vium17g00005 867 MobiDBLite consensus disorder prediction 839 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium17g00005 Vium-Chr17 28719 39995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium17g00005 707 861 C2H2 Transcription Factor Family AT2G23740 24.419 7.42e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium17g00005 SET 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium17g00005 - K11430 pvu:PHAVU_007G213900g 1614.74