Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00022 ATGGAGGGTAGTGAGACAGAGAGAGTAGAGGGTCAACGAGTGAGAGGGTTTGACATGTGGAGGAACCATTGCATGGGGGTTTTCTCAACTTCTCAACGAGAAGAAGATGAGGAAACTCTCAAGTGTGTGGCAATAGAGAGACTCCTCGCAAGGGCATGCACCAAGAGAAGTGTGGTCAACCAAGTTGGAGGGAAAGCAGAAGAGTTTGACACCAAGCAGTTGGAGTTATCAGAGAGAAAGAGCCTTCTAGATAGACTTGTGAAGATAGCAGAAGAAGATAATGAGAGGTTCTTGCTGAAGCTCAGGGAAAGGATGGACAGAGTTGGGCTTGAAATTCCAACAATTGAAGTTCGATTTGAGCATATAAATGTTGAAGCACAAGTTTATGTTGGAAGCAGAGCATTGCCTACAGTACTCAACTTCTTTGTGAATGTGCTTGAGGGGTTCTTAAATTCTCTTCACATAATTAAAAGTCCAAAGAAACCGTTACACATCCTTCAGAATGTTAGTGGAATCATAAAGCCTAAAAGAATGGCATTGCTTTTAGGACCACCAGGATCTGGAAAAACTACATTGCTGTTGGCATTGGCTGGAAGACTTGGTAAAGATTTGAAACATTCTGGGAGAGTAACATACAATGGACATGGTCTTGAGGAGTTTGTGCCACAAAGGACATCAGCTTACATAAGTCAACATGATAATCACATTGGAGAAATGACTGTGAGAGAAACACTGGCTTTCTCAGCAAGATGTCAAGGGATTGGAAAGAATTATGAGATGTTGACTGATCTGCTTAGAAGAGAGAAGGAAGCAAACATTGAACCAGATCCTGATGTTGATGCATATATGAAGGCAGCAGCACTAGAAGGACAGCAGAACAGTGTGGTCATTGACTACATTCTTAAGATTTTGGGACTTGAAGTGTGTGCTGACATTATGGTAGGAGATGAAATGATAAGGGGAATCTCAGGAGGGCAGAAAAAGAGACTCACAACAGGGGAGATGATGGTTGGACCTATAAGGGTGTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCCACAACTTTTCAGATTGTCAACTCTATCCGGCAATCCATCCATATTTTGAATGGAACTGCACTTGTGAGCTTATTACAGCCAGCACCAGAAACTTATGAACTATTTGATGATATAATACTATTAACAGATGGGCAAATTGTGTACCAAGGACCAAGAGAAAATGTACTCGAGTTTTTTGAATCAATGGGTTTCAAGTGTCCTGAAAGAAAAGGAGTTGCTGACTTCTTACAAGAAGTGACATCAAGAAAAGATCAATGGCAATATTGGGAACATAAAGATGAACCGTATAGCTTTATCACTGTCAAGGATTTTGCTGAAGCCTTCCAGTCATTTCACATAGGTAAGCAACTTGGAGATGAAATGGAAAATCCTTTTGACAAGTCTAAGGGCCATCCAAATGCATTGAGCACAAAGAAGTATGGTGTTAACAAGAAAGAGCTGTTGAGGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCCTTTGTCTATATATTCAAAGCCACACAACTTACTTATTTAGCTATCTTGACAACAACATTATTTCTCCGAACCAAGATGAGTCACTATACCAAGGAAGATGCAGAAGCTTACATGGGTGCTCTGTTCTTCACAGTCACTGTTGCAATGTTCAATGGAATATCAGAACTGAATATGACAATCATGAAACTTCCTGTCTTTTACAAGCAAAGAGACCACCTCCTTTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCATTAACCCTTGTAGAGGTTTCCATCTGGGAATGTATCTCTTATTATGCCATTGGCTATGATCCAAATATTCTCAGGCTTCTAAAACAGTACTTGGTAGTATTTTGCATTAACCAGATGGCATCAGCACTGTTTCGGTTGATGGCTGCACTAGGAAGAGATATTGTGGTGGCAAACACTGCTGGCACATTTGCACTGCTTGCAGTTACAGTTTTGGGAGGATTTGTGATTTCCAGAGAGGATGTGCACAAATGGTTTCTGTGGGGTTACTGGTCCTCACCAATGATGTATGGACAGAATGCTATAGCTGTGAATGAGTTTCTTGGGAATAGTTGGAGAAAGGTTAGTCTTAATTCCAGTGAAACATTGGGAGTACTGATACTGAAATCTCGTGGATTTTTCCCACAAGCGTATTGGTATTGGATTGGAATAGGAGCTTTGATTGGTTATGTTTTTCTCTTCAACTTTCTCTTCACCCTGGCTTTGCAATATCTCAGGCCATTCAGAAAAGATCAAGCAGGGCTATCCCAAGAGAAGTTGCTTGAGAGAAATGCTTCAATGGCTGAAGAGTTCATTCAGTTACCAACTAGAAAGAATTCTTCTGATACAAAGATGGACAAAGAAGCAAGTCCACCATCCTCTGGAGAATTTGGTAAAAAGAACATAGCCAGTGACAGTGGAAGGAGAGGCATGGTTCTTCCTTTTCAACCTCTATTCCTCGCTTTTGACGAGATAAGATATTCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAATCAGTGAGAATCGTCTAGAACTTCTGAAAGGTATTAATGGTGCTTTTAGGCCAGGGGTGCTAACAGCTCTGATGGGTGTAAGTGGTGCTGGCAAGACTACTCTACTTGATGTTCTATCTGGAAGGAAAACAAGTGGATACATCGAAGGAAGCATCACAATATCTGGATACCCAAAGAAGCAAGAAACATTTGCTCGCATATCAGGATATTGTGAACAACTTGATATCCATTCACCCAATGTTACAGTTTTTGAGTCCTTGCTATACTCAGCATGGCTTCGTTTATCTCCAGAAGTTGACAAAGAAACTAGAAAGATGTTCATTGAGGAAGTTATGGAACTTGTAGAACTTAATTCATTAAGAGAAGCACTTGTTGGATTGCCAGGACAGACTGGATTGTCAACTGAACAGCGCAAGAGGCTTACAATTGCAGTTGAACTTGTAGCCAACCCATCAATAATTTTCATGGATGAGCCAACCTCAGGCCTTGATGCTAGAGCAGCCGCAATTGTGATGAGAACTGTGAGGAACACTGTAGACACAGGTCGAACTGTGGTCTGCACCATCCACCAGCCAAGTATTGATATATTTGACGCCTTTGATGAGCTGTTACTTCTGAAATTGGGAGGGGAGCAGATATATTCTGGTCCAATTGGCAGCAACTCTTCCCATCTGATCCAGTACTTTGAGGCTGTTCAAGGAGTGCCTAAGATCAAAGATGGTTATAATCCAGCAACCTGGATGTTGGAAGTCACATCAGCAGCAAAAGAAGCAAGTCTTAATATTGACTTCACAGATGTGTACAAAAATTCAGAGCTACACAGGAGAAACAAACAACTGATTCAGGAGCTTAGTGTACCATGTCAAGGTTCAAGAGATCTATACTTTCATAGTCAGCATTCACAGAGTTTCATGGCACAACTCATAGCGTGCCTATGGAAGCAACATTTGTCATATTGGCGGAACACATCATATACTGCAGTTAGACTCCTATTTACTACAACTTCGGGCTTATTGTTTGGGGTGATATTTTGGAACGTTGGCTTCAAAAGGAGAAAGGAGCAAGATCTTTTTGATGCAATGGGTTCAATGTATGCTGCTGTTACCTTCATTGGGGTTGTGAATGGTGCCTCAGTGCAGCCTATAGTAGCAATTGAGAGAACAGTTTTCTACAGAGAAAGAGCTGCAGGAATGTATTCAGCTTTACCTTATGCTATTTCACAGGTTATTATAGAGCTTCCTCACATATTGGCTCAGGCTCTGATATATGGTATGATAGTATATGCCATGATGGGATTTGAATGGACAGCATCAAAGGTGTTTTGGAACCTCTATTACACCTACTTCAGTTTCTTATACTACACTTTCTATGGTATGATGACCATGGCCATAACTCCTAATCCACACATTGCTGGTATATTGTCCACCTCATTCTATGCAGTATGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCGAGAATACCAATATGGTGGAAATGGTACTATTGGATTTGCCCTGTTGCATGGACCTTGTATGGATTGGTGGCATCCCAATATGGAGATGACATGCAGAAGCTTGAGAATGGCCAAAGGGTTGAAGAATTTGTGAAGAGTTATTTTGGGTTTGAACATGATTTTCTTGGAGTGGTTGCAATTGTGGTGGCTGGTTTCTCACTTTTGTTTGCACTCATCTTTGCCTTTGGAATCAAAGTATTCAACTTCCAAAAAAGATGA 4335 0.4104 MEGSETERVEGQRVRGFDMWRNHCMGVFSTSQREEDEETLKCVAIERLLARACTKRSVVNQVGGKAEEFDTKQLELSERKSLLDRLVKIAEEDNERFLLKLRERMDRVGLEIPTIEVRFEHINVEAQVYVGSRALPTVLNFFVNVLEGFLNSLHIIKSPKKPLHILQNVSGIIKPKRMALLLGPPGSGKTTLLLALAGRLGKDLKHSGRVTYNGHGLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGIGKNYEMLTDLLRREKEANIEPDPDVDAYMKAAALEGQQNSVVIDYILKILGLEVCADIMVGDEMIRGISGGQKKRLTTGEMMVGPIRVLFMDEISTGLDSSTTFQIVNSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWEHKDEPYSFITVKDFAEAFQSFHIGKQLGDEMENPFDKSKGHPNALSTKKYGVNKKELLRACASREFLLMKRNSFVYIFKATQLTYLAILTTTLFLRTKMSHYTKEDAEAYMGALFFTVTVAMFNGISELNMTIMKLPVFYKQRDHLLYPSWAYSLPPWILKIPLTLVEVSIWECISYYAIGYDPNILRLLKQYLVVFCINQMASALFRLMAALGRDIVVANTAGTFALLAVTVLGGFVISREDVHKWFLWGYWSSPMMYGQNAIAVNEFLGNSWRKVSLNSSETLGVLILKSRGFFPQAYWYWIGIGALIGYVFLFNFLFTLALQYLRPFRKDQAGLSQEKLLERNASMAEEFIQLPTRKNSSDTKMDKEASPPSSGEFGKKNIASDSGRRGMVLPFQPLFLAFDEIRYSVDMPQEMKSQGISENRLELLKGINGAFRPGVLTALMGVSGAGKTTLLDVLSGRKTSGYIEGSITISGYPKKQETFARISGYCEQLDIHSPNVTVFESLLYSAWLRLSPEVDKETRKMFIEEVMELVELNSLREALVGLPGQTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYSGPIGSNSSHLIQYFEAVQGVPKIKDGYNPATWMLEVTSAAKEASLNIDFTDVYKNSELHRRNKQLIQELSVPCQGSRDLYFHSQHSQSFMAQLIACLWKQHLSYWRNTSYTAVRLLFTTTSGLLFGVIFWNVGFKRRKEQDLFDAMGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYAISQVIIELPHILAQALIYGMIVYAMMGFEWTASKVFWNLYYTYFSFLYYTFYGMMTMAITPNPHIAGILSTSFYAVWCLFSGFIIPLSRIPIWWKWYYWICPVAWTLYGLVASQYGDDMQKLENGQRVEEFVKSYFGFEHDFLGVVAIVVAGFSLLFALIFAFGIKVFNFQKR 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00022 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1084 IPR027417 -
Vium1799g00022 1444 Gene3D - 861 1094 IPR027417 -
Vium1799g00022 1444 CDD ABCG_PDR_domain2 844 1082 IPR034003 -
Vium1799g00022 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 847 1099 IPR003439 GO:0005524
Vium1799g00022 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Vium1799g00022 1444 FunFam ABC transporter G family member 34 153 457 - -
Vium1799g00022 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
Vium1799g00022 1444 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 9 1444 - -
Vium1799g00022 1444 FunFam ABC transporter G family member 40 861 1091 - -
Vium1799g00022 1444 Pfam ABC-transporter N-terminal 73 141 IPR029481 -
Vium1799g00022 1444 MobiDBLite consensus disorder prediction 805 830 - -
Vium1799g00022 1444 Pfam ABC-2 type transporter 1173 1386 IPR013525 GO:0016020|GO:0140359
Vium1799g00022 1444 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
Vium1799g00022 1444 Pfam ABC transporter 875 1027 IPR003439 GO:0005524
Vium1799g00022 1444 Pfam Plant PDR ABC transporter associated 719 780 IPR013581 -
Vium1799g00022 1444 Pfam ABC-2 type transporter 381 433 IPR043926 GO:0140359
Vium1799g00022 1444 SMART AAA_5 175 400 IPR003593 GO:0016887
Vium1799g00022 1444 SMART AAA_5 884 1076 IPR003593 GO:0016887
Vium1799g00022 1444 Gene3D - 151 456 IPR027417 -
Vium1799g00022 1444 Pfam ABC transporter 166 348 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00022 Vium-Chr1799 222695 232502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00022 885 1059 Calmodulin-binding Proteins AT2G36910 25.543 7.79e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00022 K08711 - gmx:100800368 2526.9