Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00020 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTGAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCCATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCCGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAGCAACAACAACAGCAACAACAACAACAATCACAACCTCAGCAGTCACAACCTCAGCAGTCACAACATCACCAGCAACAGCAGCAGCAACAACAACACATTCAGATGCAACACATCCTGTTACAGAGGGCCCAACAACAACAACAGCAACAACAGCAGCAACAACAACAACAACCACAACAGCAACAACAACCACAACAGCAACAACAACAACAACAGTCACAACATCAACAACCACCACCTCAGCAACAGCAGCAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGGGGAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCCGTTTTAACTCCCAGAGCTGCAGGCCCAGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGAACTGGTATAATTCAACAGAAACCACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAGCACCAACTAATTCTGGCACAACAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCATCAACAACAGCAGAATGCCAATCCACAACAACAGCAGCAGCAACTGCAACAACATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATAGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCGAAGCCATTAATGATGTTTGCTGCTGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACTGACCCGAGGGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTTACATTTTCTGAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTACAGCAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTCGATGCTGAGATCCGATATTGGAGTATTAAGAATGGAAGTTGTTCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGATGAGAATGTTGTTTCAATATTTGATGTCGAAACACAAGTATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCAGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTGAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACACTATCCGCTCATGATGGTCTTATTGCCGCATTGGCAGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACACGTTTGTGAAGCTATGGAAGTGA 2742 0.4446 MSQTNWEADKMLDVYIHDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQSQPQQSQPQQSQHHQQQQQQQQHIQMQHILLQRAQQQQQQQQQQQQQQPQQQQQPQQQQQQQQSQHQQPPPQQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGGMSPQVQARSQQLPGSTPDIKSEINPVLTPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRTGIIQQKPPFIQSPQPFHQLPMLTPQHQHQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHHQQQQNANPQQQQQQLQQHTLSNQQSQSSNHNMHQQDKIGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFAADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLQQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDAEIRYWSIKNGSCSRVSKGGTAQMRFQPRLGRYLAAADENVVSIFDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYESLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDTFVKLWK 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00020 913 MobiDBLite consensus disorder prediction 244 281 - -
Vium1799g00020 913 MobiDBLite consensus disorder prediction 262 281 - -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 881 913 - -
Vium1799g00020 913 ProSitePatterns Trp-Asp (WD) repeats signature. 690 704 IPR019775 -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 913 IPR001680 GO:0005515
Vium1799g00020 913 CDD WD40 625 913 - -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 756 IPR001680 GO:0005515
Vium1799g00020 913 SMART Lish 8 40 IPR006594 GO:0005515
Vium1799g00020 913 SUPERFAMILY WD40 repeat-like 623 913 IPR036322 GO:0005515
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 714 752 - -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 796 836 IPR001680 GO:0005515
Vium1799g00020 913 MobiDBLite consensus disorder prediction 428 465 - -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 660 IPR001680 GO:0005515
Vium1799g00020 913 Pfam WD domain, G-beta repeat 629 660 IPR001680 GO:0005515
Vium1799g00020 913 Pfam WD domain, G-beta repeat 792 826 IPR001680 GO:0005515
Vium1799g00020 913 Pfam WD domain, G-beta repeat 667 703 IPR001680 GO:0005515
Vium1799g00020 913 Pfam WD domain, G-beta repeat 876 913 IPR001680 GO:0005515
Vium1799g00020 913 Pfam WD domain, G-beta repeat 710 747 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 874 913 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 622 661 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 833 872 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 664 703 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 707 747 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 789 827 IPR001680 GO:0005515
Vium1799g00020 913 SMART WD40_4 750 786 IPR001680 GO:0005515
Vium1799g00020 913 MobiDBLite consensus disorder prediction 428 551 - -
Vium1799g00020 913 FunFam Transcriptional corepressor LEUNIG 757 913 - -
Vium1799g00020 913 MobiDBLite consensus disorder prediction 476 535 - -
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 706 IPR001680 GO:0005515
Vium1799g00020 913 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vium1799g00020 913 MobiDBLite consensus disorder prediction 147 194 - -
Vium1799g00020 913 Gene3D - 604 761 IPR015943 GO:0005515
Vium1799g00020 913 Pfam LisH 10 36 IPR006594 GO:0005515
Vium1799g00020 913 Gene3D - 762 913 IPR015943 GO:0005515
Vium1799g00020 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 671 706 - -
Vium1799g00020 913 MobiDBLite consensus disorder prediction 89 123 - -
Vium1799g00020 913 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00020 Vium-Chr1799 144510 159520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00020 708 912 Miscellaneous Gene Families AT5G08390 24.762 4.96e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium1799g00020 WD40 0.12 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00020 - - gmx:100779972 1486.86