Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00019 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTGAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCCATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCCGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAGCAACAACAACAGCAACAACAACAACAATCACAACCTCAGCAGTCACAACCTCAGCAGTCACAACATCACCAGCAACAGCAGCAGCAACAACAACACATTCAGATGCAACACATCCTGTTACAGAGGGCCCAACAACAACAACAGCAACAACAGCAGCAACAACAACAACAACCACAACAGCAACAACAACCACAACAGCAACAACAACAACAACAGTCACAACATCAACAACCACCACCTCAGCAACAGCAGCAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGGGGAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCCGTTTTAACTCCCAGAGCTGCAGGCCCAGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGAACTGGTATAATTCAACAGAAACCACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAGCACCAACTAATTCTGGCACAACAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCATCAACAACAGCAGAATGCCAATCCACAACAACAGCAGCAGCAACTGCAACAACATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATAGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCGAAGCCATTAATGATGTTTGCTGCTGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACTGACCCGAGGGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTTACATTTTCTGAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTACAGCAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTCGATGCTGAGATCCGATATTGGAGTATTAAGAATGGAAGTTGTTCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGATGAGAATGTTGTTTCAATATTTGATGTCGAAACACAAGTATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCAGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTGAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACACTATCCGCTCATGATGGTCTTATTGCCGCATTGGCAGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACACGTTTGTGAAGCTATGGAAGTGA 2715 0.4449 MSQTNWEADKMLDVYIHDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQSQPQQSQPQQSQHHQQQQQQQQHIQMQHILLQRAQQQQQQQQQQQQQQPQQQQQPQQQQQQQQSQHQQPPPQQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGGMSPQVQARSQQLPGSTPDIKSEINPVLTPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRTGIIQQKPPFIQSPQPFHQLPMLTPQHQHQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHHQQQQNANPQQQQQQLQQHTLSNQQSQSSNHNMHQQDKIGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFAADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLQQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDAEIRYWSIKNGSCSRVSKGGTAQMRFQPRLGRYLAAADENVVSIFDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYESLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDTFVKLWK 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00019 904 MobiDBLite consensus disorder prediction 428 548 - -
Vium1799g00019 904 SUPERFAMILY WD40 repeat-like 614 904 IPR036322 GO:0005515
Vium1799g00019 904 MobiDBLite consensus disorder prediction 244 281 - -
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 697 IPR001680 GO:0005515
Vium1799g00019 904 MobiDBLite consensus disorder prediction 262 281 - -
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 651 IPR001680 GO:0005515
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 705 743 - -
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 787 827 IPR001680 GO:0005515
Vium1799g00019 904 Gene3D - 595 752 IPR015943 GO:0005515
Vium1799g00019 904 SMART Lish 8 40 IPR006594 GO:0005515
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 904 - -
Vium1799g00019 904 MobiDBLite consensus disorder prediction 428 465 - -
Vium1799g00019 904 Pfam LisH 10 36 IPR006594 GO:0005515
Vium1799g00019 904 ProSitePatterns Trp-Asp (WD) repeats signature. 681 695 IPR019775 -
Vium1799g00019 904 Pfam WD domain, G-beta repeat 620 651 IPR001680 GO:0005515
Vium1799g00019 904 Pfam WD domain, G-beta repeat 701 738 IPR001680 GO:0005515
Vium1799g00019 904 Pfam WD domain, G-beta repeat 658 694 IPR001680 GO:0005515
Vium1799g00019 904 Pfam WD domain, G-beta repeat 867 904 IPR001680 GO:0005515
Vium1799g00019 904 Pfam WD domain, G-beta repeat 783 817 IPR001680 GO:0005515
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 904 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 741 777 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 865 904 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 780 818 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 655 694 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 613 652 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 824 863 IPR001680 GO:0005515
Vium1799g00019 904 SMART WD40_4 698 738 IPR001680 GO:0005515
Vium1799g00019 904 MobiDBLite consensus disorder prediction 476 535 - -
Vium1799g00019 904 FunFam Transcriptional corepressor LEUNIG 748 904 - -
Vium1799g00019 904 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vium1799g00019 904 MobiDBLite consensus disorder prediction 147 194 - -
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 747 IPR001680 GO:0005515
Vium1799g00019 904 Gene3D - 753 904 IPR015943 GO:0005515
Vium1799g00019 904 CDD WD40 616 904 - -
Vium1799g00019 904 MobiDBLite consensus disorder prediction 89 123 - -
Vium1799g00019 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 662 697 - -
Vium1799g00019 904 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00019 Vium-Chr1799 144510 159520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00019 699 903 Miscellaneous Gene Families AT5G08390 24.762 3.82e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium1799g00019 WD40 0.12 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00019 - - gmx:100779972 1459.12